To clarify the mechanism of microbial inactivation by supercritical carbon dioxide (SCCO 2 ), membrane damage of Rhodotorula mucilaginosa was investigated within specific pressure (10 Mpa), temperature (37°C), and treatment time (10-70 min) ranges, including cell morphological structure, membrane permeability and fluidity. SEM and TEM observations showed morphological changes in the cell envelope and intracellular organization after SCCO 2 treatment. Increase of membrane permeability was measured as increased uptake of the trypan blue dye with microscopy, and leakage of intracellular substances such as UV-absorbing materials and ions by determining the change of protein and electrical conductivity. The SCCO 2 mediated reduction in CFU ml -1 was 0.5-1 log higher at 37°C and 10 MPa for 60 min in Rose Bengal Medium containing 4 % sodium than a similar treatment in Rose Bengal Medium. Membrane fluidity analyzed by fluorescence polarization method using 1,6-diphenyl-1,3,5-hexatriene showed that the florescence polarization and florescence anisotropy of the SCCO 2 -treated cells were increased slightly and gently compared with the untreated cells. The correlation between membrane damage and death of cells under SCCO 2 was clear, and the membrane damage was a key factor induced the inactivation of cells.