Modeling the Brain Connectivity for Pattern Analysis

Abstract

An information theoretic approach is proposed to estimate the degree of connectivity for each voxel with its neighboring voxels. The neighborhood system is defined by spatial and functional connectivity metrics. Then, a local mesh of variable size is formed around each voxel using spatial or functional neighborhood. The mesh arc weights, called Mesh Arc Descriptors (MAD), are estimated by a linear regression model fitted to the voxel intensity values of the functional Magnetic Resonance Images (fMRI). Finally, the error term of the linear regression equation is used to estimate the mesh size for a voxel by optimizing Akaike's information Criterion, Bayesian Information Criterion and Rissanen's Minimum Description Length. fMRI measurements are obtained during a memory encoding and retrieval experiment performed on a subject who is exposed to the stimuli from 10 semantic categories. For each sample, a k-NN classifier is trained using the Mesh Arc Descriptors (MAD) having the variable mesh sizes. The classification performances reflect that the suggested variable-size Mesh Arc Descriptors represents the mental states better than the classical multi-voxel pattern representation. Moreover, we observe that the degree of connectivities in the brain greatly varies for each voxel.

Modeling the Sequence of Brain Volumes by Local Mesh Models for Brain Decoding

“…It is possible to define a different mesh size for each seed voxel by using one of the approaches mentioned above. The interested reader is referred to [31]. In this study, we select a fixed mesh size for the entire brain volume, for each stimulus.…”