The next industrial revolution, which coincided with the COVID-19 pandemic, is prompting a different look at the issue of supply chain change management. A new perspective should take into account the aspect of supply chain efficiency at multiple levels. Efficient logistics is green and energy-saving, both of which need to be systematically integrated with the logistical planning processes. The dynamic changes on the demand and supply side resulting from social, political, and economic transformations have significantly influenced the shaping of long-term supply chains. The development of new manufacturing and logistics technologies prompts the development and implementation of new integrated planning methods to support supply chain management processes. Modern supply chains are oriented towards operations in a dynamically changing socio-economic environment. The new methods are capable of incorporating dynamic adaptation of logistics infrastructure which respond to changing relationships between supply and demand. To meet the identified problems of complexity, relevance, and time-consumption of the logistic planning process in modern enterprise management, the PL9A method of logistic planning and 9A LOGPLANNER application for logistics planning were developed. The article presents the results of experimental and simulation studies on the improvement of logistic processes in a working manufacturing enterprise with application of the PL9A method. The results of the experimental work indicate that the application of the PL9A method embedded in the 9A LOGPLANNER software makes it possible to dynamically simulate any number of logistics system variants in a short period of time, while reducing risk and obtaining tangible benefits in terms of energy and ecological efficiency.