We investigate the two-photon absorption (TPA) and nonlinear refraction of a micrometer thick 3,4,9,10-perylentetracarboxyl-dianhydride (PTCDA) film using z-scans with tightly focused 100 fs laser pulses. The PTCDA film was grown by organic molecular beam deposition on a Pyrex substrate. To study the influence of sample heating, the pulse repetition rate was varied between 4 MHz and 50 kHz with an acousto-optic pulse selector. We find that thermal effects diminish for pulse repetition times longer than 5 and 0.75 µs when using a 10x or 20x microscope lens, respectively, resulting in a TPA coefficient of 6 cm/GW and a nonlinear refractive index of 1.2 x 10⁻¹³ cm²/W at a wavelength of 820 nm.