ABSTRACTleukemic cells from normal B-lineage subpopulations in bone marrow during treatment. While this can be more easily accomplished during times of continued chemotherapy and cytopenia, it is decisively more challenging in periods of hematopoietic regeneration. The performance of the FCM-MRD method depends, therefore, on the time points of application within a given treatment protocol, and the results of the FCM-MRD evaluation obtained within one study cannot be extrapolated directly to another trial if different treatment protocols are used.In the front-line ALL protocols, extensive analyses of FCM-MRD and comparisons with PCR-MRD have been performed. 12,14,25,26,[34][35][36][37][38] However, given considerable differences between front-line and relapsed ALL treatment regimens, the FCM-MRD in relapsed ALL and its relationship to PCR-MRD requires an independent comprehensive investigation. Moreover, FCM-MRD, being largely the methodology of detection of rare cells, is a technically challenging and rapidly developing field of flow cytometry. 25,27 While the majority of FCM-MRD studies have been performed using three-and four-color techniques, the recent reports on MRD data within front-line AIEOP-BFM ALL 2000 and DCOG-ALL10 protocols demonstrated improvement of the MRD analysis using six-and sevencolor FCM. 35,39 In the present study we addressed FCM-MRD in the ALL-REZ BFM 2002 relapse trial for childhood ALL using eight-color FCM and compared it with PCR-MRD in a prospective blinded study. We analyzed MRD levels by both methods in a total of 263 follow-up bone marrow samples from 122 patients with B-cell precursor (BCP)-ALL. During the study, we tested various antibody combinations, defined the protocol-adjusted antibody panel, and evaluated qualitative and quantitative concordance between FCM-MRD and PCR-MRD.
Methods
Patients and treatmentPatients in the presented study cohort had a first BCP-ALL relapse and were enrolled in the international trial ALL-REZ BFM 2002. Patients' samples were obtained in accordance with the informed consent guidelines of the local medical ethics committees. The research protocol for the assessment of MRD and the treatment protocol were approved by the local medical ethics committees. The clinical characteristics of the study cohort are presented in Online Supplementary Table S1. Standard-, intermediate-and high-risk groups and their treatment strategies are defined in the Online Supplementary Material and Methods and Online Supplementary Table S2.
Minimal residual disease assessment by polymerase chain reaction and flow cytometryIn order to analyze and optimize the FCM-MRD methodology, 263 follow-up bone marrow samples from 122 patients were assessed by FCM in parallel to PCR analysis at multiple time points during the treatment. Samples were collected and initially prepared uniformly as described in the Online Supplementary Material and Methods. PCR-MRD measurements were performed as described previously. 15,19,40 FCM-MRD was assessed on the basis of standard protocols describ...