P roteins of the Bcl-2 family play critical roles in the regulation of programmed cell death (1-3). In response to stimuli such as growth factor withdrawal, loss of cellular attachment, or DNA damage, cells from multicellular organisms can initiate their own death through apoptosis. Under such conditions, the expression of anti-apoptotic Bcl-2 family members, including Bcl-2 and Bcl-X L, can prevent the initiation of an apoptotic response and maintain the survival and͞or promote the recovery of the cell. In contrast, overexpression of pro-apoptotic family members such as Bax and Bak promotes the initiation of apoptosis in response to cytotoxic insults. These results have demonstrated that Bcl-2 proteins function to regulate the apoptotic response. However, it is less clear whether Bcl-2 proteins play roles in regulating cellular physiology under non-apoptotic conditions.Bcl-2 and Bcl-X L are constitutively expressed and are localized to the endoplasmic reticulum (ER), perinuclear, and outer mitochondrial membranes. On the basis of their localization, Bcl-2 and Bcl-X L have been hypothesized to regulate mitochondrial physiology and͞or Ca 2ϩ metabolism (4, 5). Alternatively, these anti-apoptotic proteins may function primarily to oppose the pro-apoptotic functions of two other family members required for the initiation of programmed cell death, Bax and Bak (1-3). Both Bax and Bak exist in an inactive conformation in healthy cells, and they undergo conformational changes in response to apoptotic stimuli (6-8). These conformational changes then enable their participation in events that result in apoptosis.To address whether the anti-apoptotic protein Bcl-X L influences cellular physiology in the absence of apoptotic stimuli, we have carried out an oligonucleotide-based microarray analysis of 9,500 murine genes and expressed sequence tags (ESTs) to identify global changes in gene expression in response to Bcl-X L expression. Highly reproducible changes in the expression of several genes involved in the metabolism of calcium and other divalent cations were identified. The most dramatic change was observed for the type 1 inositol 1,4,5-trisphosphate (IP 3 ) receptor (IP 3 R), an intracellular Ca 2ϩ channel gated by the secondary messenger IP 3 . IP 3 R is responsible for the mobilization of Ca 2ϩ from intracellular stores in response to signals from receptors on the plasma membrane (9, 10). One response to the release of Ca 2ϩ through IP 3 R is enhanced coupling of mitochondrial oxidative phosphorylation rate to increased cellular demand as a consequence of activation of a signal transduction cascade (5, 11). We observed a dose-dependent reduction of IP 3 R protein in cells that overexpress Bcl-X L , which further correlated with a reduction in receptor-induced Ca 2ϩ flux and with a reduced ability to release Ca 2ϩ upon IP 3 treatment of ER vesicles. Also, reduction of mitochondrial membrane potential increased the binding of the transcription factor NFATc2 to the IP 3 R promoter and IP 3 R expression. This effect was ...