Onconase™, a homolog of bovine pancreatic ribonuclease A (RNase A) with high conformational stability, is cytotoxic and has efficacy as a cancer chemotherapeutic agent. Unlike wild-type RNase A, the G88R variant is toxic to cancer cells. Here, variants in which disulfide bonds were removed from or added to G88R RNase A were used to probe the relationship between conformational stability and cytotoxicity in a methodical manner. The conformational stability of the C40A/G88R/C95A and C65A/C72A/G88R variants is less than that of G88R RNase A. In contrast, a new disulfide bond that links the N and C termini (residues 4 and 118) increases the conformational stability of G88R RNase A and C65A/C72A/ G88R RNase A. These changes have little effect on the ribonucleolytic activity of the enzyme or on its ability to evade the cytosolic ribonuclease inhibitor protein. The changes do, however, have a substantial effect on toxicity toward human erythroleukemia cells. Specifically, conformational stability correlates directly with cytotoxicity as well as with resistance to proteolysis. These data indicate that conformational stability is a key determinant of RNase A cytotoxicity and suggest that cytotoxicity relies on avoiding proteolysis. This finding suggests a means to produce new cancer chemotherapeutic agents based on mammalian ribonucleases. The free energy difference between the native and unfolded states of a protein is small-typically 5-15 kcal/mol (1, 2). In their native state, many proteins are less susceptible to proteolytic degradation than when unfolded (3). In the unfolded state, the steric protection of peptide bonds provided by the compact native state is lost (4). For example, bovine pancreatic ribonuclease A (RNase A) 1 (EC 3.1.27.5 (5, 6)) is degraded more readily by proteases in the presence of denaturants or elevated temperatures (7-10) and less readily when glycosylated (11).The rates of intracellular protein turnover vary by 10 3 -fold (12). Apparently, some proteins are better able to thwart the proteolytic machinery (13,14). These proteins remain intact and retain activity longer within the cell. A correlation between the conformational stability of a protein and its catabolism was reported over 20 years ago (15). Since then, studies using unrelated proteins have either supported (16) or contradicted (14, 17) this correlation. Drawing conclusions from these studies is problematic because the proteins were divergent in characteristics that have been implicated in metabolic turnover. In contrast, variants of a single protein, the N-terminal domain of the repressor protein from bacteriophage , have been used to demonstrate a definite link between conformational stability and metabolic turnover (18). More recently, the conformational stability of bovine pancreatic trypsin inhibitor variants was shown to correlate with the yield of intact protein produced in a heterologous system (19).RNase A homologs elicit diverse biological activities, including specific toxicity to cancer cells (20,21). Onconase™, which ...