Molecular biogeochemistry of modern and ancient marine microbes

Abstract

Biological activity has shaped the surface of the earth in numerous ways, but life's most pervasive and persistent global impact has been the secular oxidation of the surface environment. Through primary production -the biochemical reduction of carbon dioxide to synthesize biomass -large amounts of oxidants such as molecular oxygen, sulfate and ferric iron have accumulated in the ocean, atmosphere and crust, fundamentally altering the chemical environment of the earth's surface. This thesis addresses aspects of the role of marine microorganisms in driving this process. In the first section of the thesis, biomarkers (hydrocarbon molecular fossils) are used to investigate the early history of microbial diversity and biogeochemistry. Molecular fossils from the Transvaal Supergroup, South Africa, document the presence in the oceans of a diverse microbiota, including eukaryotes, as well as oxygenic photosynthesis and aerobic biochemistry, by ca. 2.7Ga. Experimental study of the oxygen requirements of steroid biosynthesis suggests that sterane biomarkers in late Archean rocks are consistent with the persistence of microaerobic surface ocean environments long before the initial oxygenation of the atmosphere. In the second part, using Prochlorococcus (a marine cyanobacterium that is the most abundant primary producer on earth today) as a model system, we explored how microbes use the limited nutrient resources available in the marine environment to make the protein catalysts that enable primary production. Quantification of the Prochlorococcus proteome over the diel cell-division cycle reveals that protein abundances are distinct from transcript-level dynamics, and that small temporal shifts in enzyme levels can redirect metabolic fluxes. This thesis illustrates how molecular techniques can contribute to a systems-level understanding of biogeochemical processes, which will aid in reconstructing the past of, and predicting future change in, earth surface environments. ACKNOWLEDGMENTSI have incurred many debts of gratitude and appreciation over the course of this work. None are greater than those to my advisors, Penny Chisholm and Roger Summons, who allowed and enabled me to pursue such a wide range of scientific interests and offered their help and advice every step of the way. I have been very lucky to have had the chance to learn so much during my Ph.D., and none of that would have been possible without their guidance and support.I have also had the great fortune to know and work with all the members of the Chisholm and Summons labs, who have made this an enjoyable and rewarding place to be. I am especially grateful to Laura Sherman for her skill and dedication in analyzing biomarkers in the late Archean cores -it was truly getting blood from a stone. I was lucky to collaborate with Sébastien Rodrigue, whose expertise and collegiality made the diel experiment even more fruitful than I could have hoped. IntroductionThe coevolution of life and earth surface environments is central to the history and functionin...

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