By using a lactose permease mutant containing a single Cys residue in place of Val 331 (helix X), conformational changes induced by ligand binding were studied. With right-side-out membrane vesicles containing Val 331 + Cys permease, lactose transport is inactivated by either N-ethylmaleimide (NEM) or 7-diethylamino-3-(4'-maleimidylphenyl)-4-methylcoumarin (CPM). Remarkably, 0,D-galactopyranosyl I-thio-0,D-galactopyranoside (TDG) enhances the rate of inactivation by CPM, a hydrophobic sulfhydryl reagent, whereas NEM inactivation is attenuated by the ligand. Val 33 1 + Cys permease was then purified and studied in dodecyl-0,D-maltoside by site-directed fluorescence spectroscopy. The reactivity of Val 331 "+ Cys permease with 2-(4'-maleimidylanilino)-naphthalene-6-sulfonic acid (MIANS) is not changed over a low range of TDG concentrations (<0.8 mM), but the fluorescence of the MIANS-labeled protein is quenched in a saturable manner (apparent Kd 0.12 mM) without a change in emission maximum. In contrast, over a higher range of TDG concentrations (1-10 mM), the reactivity of Val 331 + Cys permease with MIANS is enhanced and the emission maximum of MIANS-labeled permease is blue shifted by 3-7 nm. Furthermore, the fluorescence of MIANS-labeled Val 331 --t Cys permease is quenched by both acrylamide and iodide, but the former is considerably more effective. A low concentration of TDG (0.2 mM) does not alter quenching by either compound, whereas a higher concentration of ligand (10mM) decreases the quenching constant for iodide by about 50% and for acrylamide by about 20%. Finally, the EPR spectrum of nitroxide spin-labeled Val 331 + Cys permease exhibits 2 components with different mobilities, and TDG causes the immobilized component to increase. The results provide evidence for the argument that lac permease has more than a single binding site. TDG binding to a higher affinity site quenches the fluorescence of MIANS-labeled Val 33 1 + Cys permease, and occupation of a second lower affinity site causes position 33 1 to become more accessible from a hydrophobic environment.Keywords: C-less permease; ligand-protein interaction; MIANS; site-directed fluorescence; site-directed spin labeling Lactose permease of Escherichia coli is a hydrophobic, polytopic, plasma membrane protein that catalyzes the coupled stoichiometric translocation of 0-galactosides and H + (reviewed in Kaback, , 1989Kaback, , 1992. The permease is encoded by the lacy Reprint requests to: H. Ronald Kaback, HHMI/UCLA, 6-720 MacDonald Building, 10833 Le Conte Avenue, Los Angeles, California 90024-1662; e-mail: ronaldk@hhmi.ucla.edu.Abbreviurions: lac, lactose; C-less permease, functional lac permease devoid of Cys residues; NEM, N-ethylmaleimide; CPM, 7-diethylamino-3-(4"maleimidylphenyl)-4-methylcoumarin; MIANS, 2-(4'-maleimidylanilino)-naphthalene-6-sulfonic acid; A H + , the H + electrochemical gradient across the membrane; dodecylmaltoside, dodecyl-0,D-maltoside; KPi, potassium phosphate; TDG, 6,D-galctopyranosyl 1-thio-0,D-galactopyranoside;...