Of 1,388 Streptococcus pneumoniae isolates collected from 2000 to 2005, 10.5% had a ciprofloxacin MIC of >4.0 g/ml and 1.6% (range, 0.8% to 4.3% per year) had a levofloxacin MIC of >4.0 g/ml. Molecular characterization indicated that fluoroquinolone resistance occurred independently in our prevalent Spain 23F -1 clone, expressing serotypes 23F, 19F, and 14. Rates of resistance to levofloxacin in S. pneumoniae have remained stable at a Hong Kong hospital.Drug-resistant Streptococcus pneumoniae is a major concern in Hong Kong. The rate of fluoroquinolone resistance in S. pneumoniae has been reported as one of highest in the world, with a levofloxacin resistance rate (MIC of Ն4 g/ml) of 13.3% (7). Among invasive isolates, a resistance rate of 3.8% was documented, although it increased to 15.2% in penicillin-resistant S. pneumoniae isolates (8). These strains have been linked to penicillin-nonsusceptible pneumococcal (PNSP) clones (8,16). In Canada, the rate of ciprofloxacin resistance in S. pneumoniae increased from Ͻ1% in 1997 to 4.2% in 2005, with a rise in the levofloxacin resistance rate to 1.1% (1). In the United States, levofloxacin resistance increased from 0.6% to 1.3% (18). Among those strains with a levofloxacin MIC of 2 g/ml, first-step mutations were present in 16.2% of isolates recovered from nursing home residents, compared to 6.5% of isolates recovered from others (17). Such strains have been considered precursors to fully resistant strains (3, 21). Treatment failure with fluoroquinolones due to selection with second-step mutation has been reported (5,14).At the Prince of Wales Hospital (PWH), a 1,350-bed teaching hospital in Hong Kong, we longitudinally tracked the prevalence of fluoroquinolone resistance in S. pneumoniae isolates for the period 2000 to 2005. The clonal relationships of S. pneumoniae isolates with a ciprofloxacin MIC of Ն4 g/ml as determined by serotyping and pulsed-field gel electrophoresis (PFGE) and the mutations at the quinolone resistance-determining region (QRDR) of the gyrA, gyrB, parC, and parE genes were studied.Bacterial isolates and susceptibility tests. A total of 1,388 nonduplicate S. pneumoniae isolates from the blood and sputa of patients admitted to the PWH were examined. The MICs of penicillin, cefotaxime, ciprofloxacin, and levofloxacin were determined by the broth dilution method described by the Clinical and Laboratory Standards Institute (2).PFGE and serotyping. One hundred eight isolates with ciprofloxacin MICs of Ն4 g/ml were examined by PFGE as described previously (6, 11). Serotyping was performed using Pneumotest antisera (Statens Serum Institute, Copenhagen, Denmark). Representative isolates of the Spain 23F -1 clone which produced the indistinguishable PFGE pattern type A were included. Other PFGE types and subtypes were assigned as done by Tenover et al. (23).Analysis of fluoroquinolone resistance genes. The mutations in the QRDRs of the gyrA, gyrB, parC, and parE genes were examined by PCR-restriction fragment-single-strand conformational polymorphism a...