Molecular characterization and phylogenetic analysis of Wx genes of four diploid species of the Triticeae genera Eremopyrum, Psathyrostachys, and Henrardia

The ratio of amylose/amylopectin can greatly influence the end-use quality of wheat products, and amylose synthesis only needs the granule-bound starch synthase I that is encoded by the Waxy (Wx) gene. Hence, the Wx allele variability is a vital determinant of amylose synthesis. In this study, four novel Wx genes were isolated from two diploid Triticeae species. Their sequence variations were analyzed, which showed that the polymorphism among the Wx-F1 alleles was low; only seven single nucleotide polymorphisms (SNPs) and one amino acid (AA) residue change (Arg541 ? Cys) were detected in the exon regions, and this change in Wx-F1b was predicted to have deleterious effects on protein function. The two Wx-Ns1 alleles in this study were different from two published alleles obtained using three overlapping primer sets. The polymorphism among the four Wx-Ns1 alleles was high, and 37 SNPs and ten AA residue changes were found, while all of those substitutions were neutral. However, one substitution (Leu237 ? Pro) between Wx-H1 and Wx-Ns1 was predicted that would probably affect the protein function. Divergence time analysis showed that Wx-Ns1a diverged from Wx-Ns1b about 1.06 MYAs. Phylogenetic analysis indicated that Wx-F1 were more closely related to Wx-O1 from Henrardia persica, Wx-R1 from Secale cereale ssp. cereale, and Wx-Xe1 from Eremopyrum triticeum, while Wx-Ns1 were more closely related to Wx-H1 from Hordeum vulgare ssp. vulgare and Wx-Hch1 from Hordeum chilense. These genes may be important candidates for wheat quality improvement.

show abstract

scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.

Contact Info

customersupport@researchsolutions.com

10624 S. Eastern Ave., Ste. A-614

Henderson, NV 89052, USA

This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.

Blog Terms and Conditions API Terms Privacy Policy Contact Cookie Preferences Do Not Sell or Share My Personal Information

Made with 💙 for researchers

Part of the Research Solutions Family.

Molecular characterization and phylogenetic analysis of Wx genes of four diploid species of the Triticeae genera Eremopyrum, Psathyrostachys, and Henrardia

Cited by 2 publications

References 38 publications

Characterization of a novel Wx-A1b′ null allele and PCR markers for allele identification at three Wx loci

Characterization of a novel Wx-A1b′ null allele and PCR markers for allele identification at three Wx loci

Molecular characterization and phylogenetic analysis of novel Wx genes from Psathyrostachys juncea and Eremopyrum bonaepartis

Contact Info

Product

Resources

About