Background: Hemoglobinopathies are priority genetic diseases for prevention programs. Rapid genotype characterization is fundamental in the diagnostic laboratory, especially when offering prenatal diagnosis for carrier couples. Methods: As a model, we designed a protocol based on the LightCycler TM technology to screen for a spectrum of -globin gene mutations in the Greek population. Design was facilitated by dual fluorochrome detection and close proximity of many mutations. Three probe sets were capable of screening 95% of -globin gene mutations in the Greek population, including IVSII-745C3 G, HbS, Cd5-CT, Cd6-A, Cd8-AA, IVSI-1G3 A, IVSI-5G3 A, IVSI-6T3 C, IVSI-110G3 A, and Cd39 C3 T. Results: The protocol, standardized by analysis of 100 -thalassemia heterozygotes with known mutations, was 100% reliable in distinguishing wild-type from mutant alleles. Subsequent screening of 100 Greek -thalassemia heterozygotes with unknown mutations found 96 of 100 samples heterozygous for 1 of the 10 mutations, although melting curves were indistinguishable for mutations ⌯bS/Cd6 and IVSI-5/IVSI-1, indicating a need of alternative methods for definitive diagnosis. One sample demonstrating a unique melting curve was characterized by sequencing as Cd8/9؉G. Three samples carried mutations outside the gene region cov-