Cell signaling leading to the formation of leukotriene (LT)C4 requires the localization of the four key biosynthetic enzymes on the outer nuclear membrane and endoplasmic reticulum. Whether any macromolecular organization of these proteins exists is unknown. By using fluorescence lifetime imaging microscopy and biochemical analysis, we demonstrate the presence of two distinct multimeric complexes that regulate the formation of LTs in RBL-2H3 cells. One complex consists of multimers of LTC4 synthase and the 5-lipoxygenase activating protein (FLAP). The second complex consists of multimers of FLAP. Surprisingly, all LTC4 synthase was found to be in association with FLAP. The results indicate that the formation of LTC4 and LTB4 may be determined by the compartmentalization of biosynthetic enzymes in discrete molecular complexes.L eukotrienes (LT)s, C 4 , D 4 , and E 4 play a central role in the initiation and amplification of the inflammatory response, the pathogenesis of asthma, aspirin-sensitive rhinosinusitis rhinitis, and in the activation and trafficking of cells of the immune and hematopoetic systems (1-9). These products of the 5-lipoxygenase (5-LO) pathway of arachidonic acid metabolism transduce signals by means of distinct receptors for LTD 4 (CysLT1), LTC 4 (CysLT2), and LTB 4 (BLT1 and BLT2). Mast cells and macrophages play a critical role in the initiation of the inflammatory response, and these cells have the capacity to synthesize both LTC 4 and LTB 4 . However, how they balance the synthesis between these two bioactive lipids is not known.The formation of LTC 4 requires the functional interaction of at least four proteins on the outer nuclear membrane or endoplasmic reticulum. Cytoplasmic phospholipase A 2 and 5-LO are translocated to these membranes after cell activation (10-13). The 17-kDa integral membrane protein 5-LO-activating protein (FLAP), is expressed in myeloid cells, and is required for the formation of LTs. FLAP may serve as an arachidonic acidbinding protein, allowing arachidonic acid to be presented to 5-LO for conversion to both 5-HPETE and LTA 4 (14-18). To form LTC 4 , LTA 4 is conjugated with reduced glutathione by LTC 4 synthase, a 17-kDa integral membrane protein that shares a high identity with FLAP (19-23). Two untested models for the membrane organization of LTC 4 synthesis can be proposed. In one model, free arachidonic acid and its products diffuse throughout cells, and the formation of LTC 4 is determined simply by substrate availability and the kinetic properties of the relevant enzymes. In the second model, an organized multiprotein complex regulates the efficient transfer of the products of one reaction to the downstream enzyme, allowing the efficient synthesis of LTC 4 , and preventing the potential consequences of the free diffusion of 5-HPETE and LTA 4 (24). To search for a multiprotein complex of LT-forming enzymes, we determined the membrane interactions of LTC 4 synthase and FLAP by using fluorescence lifetime imaging microscopy (FLIM) supported by coimmunoprecipi...