The proteins expressed by a genome have been termed the proteome. By comparing the proteome of a disease‐affected tissue with the proteome of an unaffected tissue it is possible to identify proteins that play a role in a disease process. The hippocampus is involved in the processing of short‐term memory and is affected in Alzheimer's disease. Any comparative proteome analysis that can identify proteins important in a disease affecting the hippocampus requires the characterization of the normal hippocampal proteome. Therefore, we homogenised normal hippocampal tissue and separated the proteins by two‐dimensional polyacrylamide gel electrophoresis (2DE). Seventy‐two unique protein spots were collected from Coomassie blue‐stained 2DE gels and subjected to in‐gel digestion with trypsin, reversed‐phase high‐pressure liquid chromatography peptide separation, and N‐terminal protein sequencing. Sufficient protein sequence was obtained to successfully characterize 66 of the 72 protein spots chosen (92%). Three of the 66 proteins were not present in any database (4.5%). The characterized proteins comprised two dominant functional groups, i.e., enzymes involved in intermediary cellular metabolism (40%), and proteins associated with the cytoskeleton (15%). The identity, molecular mass, isoelectric point, and relative concentration of the characterized proteins are described and constitute a partial proteome map of the normal human hippocampus. Hippocampus 1999;9:644–650. © 1999 Wiley‐Liss, Inc.