CHAPTER1. General Introduction CHAPTER 2. Abiotic and biotic stress affects on defense trait phenotypes in a wild cotton species, Gossypium davidsonii CHAPTER 3. Response of herbivory to defense traits, geographic and genetic structure within a Sonoran Desert wild cotton species, Gossypium davidsonii CHAPTER 4. Comparison of quantitative defense traits and genetics in determining evolution of defense syndromes in a wild Sonoran Desert cotton endemic, Gossypium davidsonii CHAPTER 5. Covariation in the geographic genetic structures of a wild cotton, Gossypium davidsonii, and associated boll weevil, Anthonomus grandis CHAPTER 6. Population structure and genetic diversity of the boll weevil, Anthonomus grandis, in North America CHAPTER 7. General Conclusions APPENDIX. DNA Sequencing Research Rationale: Recognizing the mechanisms and patterns of evolution of natural plant defenses not only allows us to understand how to reasonably control host associated pest populations, but also to direct better-suited breeding and selection programs for traits associated with tolerance or resistance to otherwise uncontrollable pests (Gould 1988; Cortesero et al. 1999; Rausher 2001; Thrall et al. 2011). Though this thesis work focuses on Gossypium davidsonii, similar defense traits and responses to herbivory can be seen in many of the New World cotton species (Rudgers et al. 2004). Understanding how plants respond to herbivory in natural systems should provide us with insights into variation in traits that may provide resistance within agronomic settings. Additionally, population genetic studies of associated pest insects have identified approaches that best control associated insect herbivore populations (Porreta et al., 2007). Study System Gossypium davidsonii is a wild diploid cotton species that is endemic to the Sonoran Desert of northwestern Mexico, found in the subsection Integrifolia within the genus Gossypium (Family Malvaceae). It is commonly characterized as a branched shrub between 1-3 meters in height, with lobed to entire cordate leaves. The species is found from sea level to 400 m elevation with primary range within the lower Cape region of the Baja Peninsula. Habitat ranges from open to thorn-scrub vegetation in disturbed or rocky areas. Like most cotton species, G. davidsonii exhibits several characteristic defense traits. Though variation in nectary presence has been previously noted (Phillips and Clements, 1967), we detect no biological reason for selection on nectaries, as no myrmechophyllic 12 CHAPTER 2. Abiotic and biotic stress affects on defense trait phenotypes in a wild cotton species, Gossypium davidsonii