Limitations of genome-wide approaches for genetically-heterogenous orphan diseases led us to develop a new approach to identify novel Emery-Dreifuss muscular dystrophy (EDMD) candidate genes. We generated a primer library to genes: (I) linked to EDMD, (II) mutated in related muscular dystrophies, (III) highlighted from limited exome sequencing, (IV) encoding muscle-specific nuclear membrane proteins. Sequencing 56 unlinked EDMD patients yielded confirmed or strong candidate alleles from all categories, accounting for most remaining unlinked patients. Known functions of newly-linked genes argue the EDMD pathomechanism is from altered gene regulation and mechanotransduction through connectivity of candidates from the nuclear envelope to the plasma membrane.Keywords: Emery-Dreifuss muscular dystrophy; nuclear envelope; nuclear envelope transmembrane protein; primer library; orphan disease
4/41Emery-Dreifuss muscular dystrophy (EDMD) is a rare neuromuscular disorder affecting ~0.3-0.4 in 100,000 people 1,2 . EDMD patients present typically in childhood with early contractures of elbows and Achilles' tendons, progressive wasting of lower leg and upper arm muscles, and later development of cardiac conduction defects and, in a proportion of cases, dilated cardiomyopathy 3 . Features vary considerably in clinical presentation, leading to the usage 'Emery-Dreifuss-like syndromes' 4,5 : patients from the same pedigree can show remarkable phenotypic variation 6-8 . Consistent with this variation, EDMD is also genetically variable: ~half of Emery-Dreifuss-like syndrome cases are linked to mutations in genes encoding 6 nuclear envelope proteins (emerin, lamin A, nesprin 1, nesprin 2, SUN1 and FHL1 [8][9][10][11][12] ). Variants in desmin and nuclear envelope proteins Tmem43 and SUN2 have been reported to modify the EDMD phenotype 11,13,14 . Roughly half of clinically diagnosed patients remain unlinked 15,16 .The strong nuclear envelope link raised the possibility that remaining unlinked patients might also have mutations in nuclear envelope proteins. The nuclear envelope is linked to >30 inherited diseases and syndromes 17 , each with distinct tissue-specific pathologies: for example different lamin A mutations cause muscular dystrophies, neuropathy, lipodystrophy, and multisystemic disorders 18 . How these widely expressed nuclear envelope proteins yield tissue-specific pathologies remains unresolved, but one hypothesis is that tissue-specific nuclear envelope partners mediate the tissue-specificity of effects 18,19 .We previously identified several muscle-specific nuclear envelope transmembrane proteins (NETs) 20 . Of the previously linked proteins emerin, nesprin 1, nesprin 2, SUN1, SUN2, and Tmem43 are all NETs, but these are widely expressed. Several of the musclespecific NETs identified could contribute muscle specificity to either of the two principly hypothesized EDMD pathomechanisms: mechanical instability and disruption of gene 5/41 expression 21 . NETs Tmem214 and KLHL31 track with microtubules on the nuclear surfa...