Molecular Marker Development Using Bioinformatic Tools

Rajendrakumar, P.

doi:10.1007/978-81-322-2422-8_8

Search citation statements

Order By: Relevance

Paper Sections

Select...

Fig 2: Snp Position1

Citation Types

Supporting

Mentioning

Contrasting

Year Published

2018

2023

Publication Types

Select...

Article1

Other1

Relationship

Self Cite0

Independent2

Authors

Journals

Cited by 2 publications

(1 citation statement)

References 103 publications

(62 reference statements)

Supporting

Mentioning

Contrasting

Order By: Relevance

“…BLAST (Altschul et al, 1990;Rajendrakumar, 2015), CAP3 (Huang and Madan, 1999) and auto SNP. These ones are a SNP discovery pipeline as can be seen in Fig.…”

Section: Fig 2: Snp Positionmentioning

confidence: 99%

Performance Improvement of SNP Search Using Multithread Programming

Zafalon¹,

Cruz²,

Amorim³

et al. 2018

Journal of Computer Science

View full text Add to dashboard Cite

Pattern recognition is an important field in Bioinformatics and a well-known task is the search for Single Nucleotide Polymorphism (SNP). It is possible to search for a known SNP position and analyze it using patterns of DNA bases, called masks. Nonetheless, this process becomes computationally expensive as the amount of available genomic data increases. Thus, in this study, we have developed a parallelization scheme, based on multithread programming, to SNP analysis using masks. In our tests, we noticed that the proposed scheme improved the execution time in 98.05 times when compared with the sequential approach.

show abstract

“…BLAST (Altschul et al, 1990;Rajendrakumar, 2015), CAP3 (Huang and Madan, 1999) and auto SNP. These ones are a SNP discovery pipeline as can be seen in Fig.…”

Section: Fig 2: Snp Positionmentioning

confidence: 99%