Molecular phylogeny of the highly diversified catfish subfamily Loricariinae (Siluriformes, Loricariidae) reveals incongruences with morphological classification

Covain, Raphaël; Fisch-Muller, Sonia; Oliveira, Cláudio; Mol, Jan H.; Montoya‐Burgos, Juan I.; Dray, Stéphane

doi:10.1016/j.ympev.2015.10.018

Cited by 68 publications

(147 citation statements)

References 53 publications

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“…Both Covain et al (2008) and Rodriguez et al (2011) included Dasyloricaria tuyrensis in their molecular analyses of the Loricariinae, recovering the genus close to the base of the Loricariini, sister-group to a big clade including most Loricariini except Metaloricaria. In addition, Covain et al (2016) included Dasyloricaria latiura and D. tuyrensis (herein considered to be synonyms) in their recent reassessment of the Loricariinae phylogeny. Covain et al (2016) recovered Dasyloricaria as sister to Fonchiiloricaria, and that clade nested near the base of their Loricariina.…”

Section: Discussionmentioning

confidence: 99%

“…In addition, Covain et al (2016) included Dasyloricaria latiura and D. tuyrensis (herein considered to be synonyms) in their recent reassessment of the Loricariinae phylogeny. Covain et al (2016) recovered Dasyloricaria as sister to Fonchiiloricaria, and that clade nested near the base of their Loricariina.…”

Section: Discussionmentioning

confidence: 99%

“…Alternatively, two analyses using molecular evidence that included Dasyloricaria tuyrensis (Covain et al, 2008;Rodriguez et al, 2011) and three genetic markers (one nuclear and two mitochondrial genes) indicated that the genus is sister to all Loricariini. Finally, a recent phylogenetic study by Covain et al (2016) of the Loricariinae, including two species of Dasyloricaria (D. latiura and D. tuyrensis), found it to be the sister group of Fonchiiloricaria Rodriguez, Ortega & Covain, 2011, this clade appearing as related to Metaloricaria Isbrücker, 1975. More than 30 years have passed since Dasyloricaria was described, and a century since the description of the last species included in the genus. Despite those lengthy time periods, no taxonomic or phylogenetic assessments of its five species exist.…”

Section: Introductionmentioning

confidence: 98%

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Taxonomic revision and phylogenetic relationships of Dasyloricaria Isbrücker & Nijssen, 1979 (Siluriformes: Loricariidae), with description of a new species

Londoño-Burbano

Reis

2016

Neotrop. ichthyol.

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A taxonomic revision and phylogenetic analysis were completed for Dasyloricaria. The genus includes three valid species: D. filamentosa and D. latiura previously included in the genus, and a new species described herein. Dasyloricaria have a restricted trans-Andean distribution, with D. filamentosa occurring at the lower and middle Magdalena, lower Cauca, and Sinu in Colombia, and lago Maracaibo basin in Colombia and Venezuela; D. latiura in the Atrato and the Tuyra basins in Colombia and Panama, respectively; and the new species in the upper and middle Magdalena basin in Colombia. New synonyms for D. filamentosa and D. latiura are proposed, and a lectotype is designated for the latter. Dasyloricaria is herein recognized as monophyletic, with D. filamentosa as the sister group of D. latiura, and the new species as sister to that clade. Spatuloricaria is hypothesized to be the sister group of Dasyloricaria based on synapomorphies of the neurocranium, branchial arches and external morphology features. The subtribe Rineloricariina was partially corroborated through the phylogenetic analysis. An identification key for the species of Dasyloricaria is provided.Una revisión taxonómica y análisis filogenético fueron realizados para Dasyloricaria. El género incluye tres especies válidas: D. filamentosa y D. latiura previamente incluidas en el género, y una especie nueva descrita en este estudio. Dasyloricaria presenta una distribución estrictamente Transandina, con D. filamentosa ocurriendo en las porciones baja y media del rio Magdalena, bajo Cauca, y en el rio Sinú en Colombia, y en el lago Maracaibo en Colombia y Venezuela; D. latiura en la cuenca de los ríos Atrato y Tuyra en Colombia y Panamá, respectivamente; y la especie nueva en las porciones alta y media del rio Magdalena en Colombia. Nuevas sinonimias para D. filamentosa y D. latiura son propuestas, y el lectotipo es designado para esta última. Dasyloricaria es aquí reconocido como monofilético, con D. filamentosa como el grupo hermano de D. latiura, y la especie nueva como el grupo hermano de ese clado. Spatuloricaria es propuesto como el grupo hermano de Dasyloricaria, este clado está soportado por sinapomorfías del neurocráneo, arcos branquiales y características de morfología externa. La sub-tribu Rineloricariina fue parcialmente corroborada a partir del análisis filogenético. Una clave de identificación para las especies de Dasyloricaria es presentada.

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Section: Discussionmentioning

confidence: 99%

Section: Discussionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 98%

See 1 more Smart Citation

Taxonomic revision and phylogenetic relationships of Dasyloricaria Isbrücker & Nijssen, 1979 (Siluriformes: Loricariidae), with description of a new species

Londoño-Burbano

Reis

2016

Neotrop. ichthyol.

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“…Classification of taxa of higher taxonomic ranks (Class to Suborder) and arrangement order of respective taxa followed the proposal of Betancur-R. et al (2017). The following proposals of classification were adopted for the indicated groups: Tagliacollo et al (2016): Gymnotiformes; Mirande (2009, 2010) and Oliveira et al (2011): Characiformes, but in incongruent cases, we just adopted the latest published proposal (i.e., Oliveira et al 2011), not implying in any form a validation over the former works of Mirande; Thomaz et al (2015): Stevardiinae; Sullivan et al (2006): Siluriformes; Lujan et al (2015a): Hypostominae; Roxo et al (2014): Hypoptopomatinae and Otothyrinae; Covain et al (2016): Loricariinae; Birindelli (2014): Doradoidea; Sullivan et al (2013a): Pimelodoidea; López-Fernández et al (2010): Cichlidae. For remaining groups we followed Nelson et al (2016).…”

Section: Methodsmentioning

confidence: 99%

Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem

DoNascimiento¹,

Herrera-Collazos²,

Herrera‐R³

et al. 2017

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The present work is part of a process to create a Catalogue of the Freshwater Fishes of Colombia and consisted in the depuration and updating of the taxonomic and geographic components of the checklist of the freshwater fishes of Colombia. An exhaustive revision of the 1435 species recorded in 2008 was necessary to: 1. Add new species described since 2009 and species originally described from Colombia but inadvertently omitted in 2008; 2. Add new records of already described species; 3. Delete species whose presence in Colombia was not supported by voucher specimens in ichthyological collections; and 4. Revise the geographic distribution of the species listed in 2008. This process resulted in the following numbers: 1. Total number of freshwater fish species in Colombia: 1494; 2. Number of species recorded by hydrographic region - Amazon: 706, Orinoco: 663, Caribbean: 223, Magdalena-Cauca: 220, Pacific: 130; and 3. Number of endemic species: 374 (76% from the trans-Andean region). Updating the current checklist is a fundamental requirement to ensure its incorporation in the decision-making process with regard to the conservation of Colombian aquatic species and ecosystems, which are facing transformation processes as a result of activities such as mining, construction of hydroelectric plants, expansion of the agricultural frontier and subsequent deforestation, industrial and domestic pollution, development of waterways, introduction of exotic species, and climate change.

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“…Although numerous phylogenetic studies have highlighted sister relationships between Guianese and Amazonian fishes (e.g. in Potamorrhaphis : Lovejoy and De Araujo, ; Prochilodontidae: Turner et al., ; Melo et al., ; Cichlidae: Willis et al., ; Guyanancistrus : Cardoso and Montoya‐Burgos, ; Fisch‐Muller et al., ; Pseudancistrus : Covain and Fisch‐Muller, ; Silva et al., ; Pimelodidae: Lundberg et al., ; Chilodontidae: Melo et al., ; Hypostominae: Lujan et al., ; Loricariinae: Covain et al., ; Panaqolus and Panaque : Lujan et al., ), the origins of the Guianese ichthyofauna are not well understood, and several hypotheses have been proposed to explain the present distribution. Connections between Amazonian and Guianese systems have been reported or hypothesized by different authors as potential regions of exchange.…”

Section: Introductionmentioning

confidence: 99%

Biogeography of the freshwater fishes of the Guianas using a partitioned parsimony analysis of endemicity with reappraisal of ecoregional boundaries

Lemopoulos

Covain

2018

Cladistics

Self Cite

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The Guianas are one of the most diverse regions of the Neotropics, hosting a particularly high rate of freshwater fish endemism. The present distributional patterns of freshwater fish species in the major catchments of the Guianas (comprising Guyana, Suriname and French Guiana) were analysed to reveal the faunal relationships between rivers, evaluate different hypotheses concerning biogeographical units, and redefine the boundaries of the Guianese freshwater ecoregions. A parsimony analysis of endemicity was performed using a data partitioning strategy to alleviate some drawbacks inherent to the method (e.g. long branch attraction artefact, heterotachy), and take into account alternative parsimony models assigning different constraints on state changes for the different species. A strong spatial element was present in the data with a structuring of species along a west-east gradient. Two main biogeographical units were highlighted: one to the west, ranging from the Essequibo to the Commewijne rivers and including the Proto Berbice and Surinamese regions, and one to the east ranging from the Maroni to the Oyapock rivers and including the Western, Central and Eastern French Guiana regions. Each ecoregion possessed distinctive fish assemblages, and three to four potential zones of faunal exchanges between Amazonian and Guianese rivers have been confirmed.

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Molecular phylogeny of the highly diversified catfish subfamily Loricariinae (Siluriformes, Loricariidae) reveals incongruences with morphological classification

Cited by 68 publications

References 53 publications

Taxonomic revision and phylogenetic relationships of Dasyloricaria Isbrücker & Nijssen, 1979 (Siluriformes: Loricariidae), with description of a new species

Taxonomic revision and phylogenetic relationships of Dasyloricaria Isbrücker & Nijssen, 1979 (Siluriformes: Loricariidae), with description of a new species

Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem

Biogeography of the freshwater fishes of the Guianas using a partitioned parsimony analysis of endemicity with reappraisal of ecoregional boundaries

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