In this paper, we present an all-atomistic molecular dynamics simulation study to understand the separation of cadmium (Cd 2+ ) and lead (Pb 2+ ) from the aqueous waste using directional solvent extraction (DSE) using decanoic acid (DEC) as an extractant. Different structural, dynamic, and thermodynamic properties were evaluated such as mass density profiles, radial distribution functions, self-diffusion, solvation free energy (ΔG Solv ), and transfer free energy (ΔG Transfer ). The peak intensity of mass density distribution of Cd(NO 3 ) 2 and Pb(NO 3 ) 2 shows an increase with an increase in temperature (T). The radial distribution function between the Cd 2+ and NO 3 − and Pb 2+ and NO 3 − shows a significantly higher interaction with the maximum interaction between Cd 2+ and NO 3 − . Compared to the intermolecular structure between bulk water and solvent mixed systems, we observe that metal ion water interactions are higher in bulk water, which start to decrease in the presence of a solvent. We further investigate thermodynamic analysis using free energy simulations. The ΔG Solv of Cd 2+ and Pb 2+ becomes favorable with an increase in T in DEC, while it becomes unfavorable in H 2 O. The ΔG Transfer of Cd 2+ and Pb 2+ from H 2 O to DEC becomes favorable with an increase in T. The partition coefficient (log P) values show positive values for Cd 2+ and Pb 2+ . The self-diffusion (D) of metal ions shows a 60% decrease for Cd 2+ and a 75% decrease for Pb 2+ compared to their D values in bulk water. The D values of H 2 O increase with T. Overall, we observe that the H 2 O, solvent, and metal ions are sensitive to the temperature. These molecule-level results help in guiding the solvent design for separating heavy metal ions using DSE.