The structures of pyrrolic forms of cross-links in collagen have been confirmed by reacting collagen peptides with a biotinylated Ehrlich's reagent. This reagent was synthesized by converting the cyano group of N-methyl-N-cyanoethyl-4-aminobenzaldehyde to a carboxylic acid, followed by conjugation with biotin pentylamine. Derivatization of peptides from bone collagen both stabilized the pyrroles and facilitated selective isolation of the pyrrole-containing peptides using a monomeric avidin column. Reactivity of the biotinylated reagent with collagen peptides was similar to that of the standard Ehrlich reagent, but heat denaturation of the tissue before enzyme digestion resulted in the loss of about 50% of the pyrrole cross-links. Identification of a series of peptides by mass spectrometry confirmed the presence of derivatized pyrrole structures combined with between 1 and 16 amino acid residues. Almost all of the pyrrole-containing peptides appeared to be derived from N-terminal telopeptide sequences, and the nonhydroxylated (lysine-derived) form predominated over pyrrole cross-links derived from helical hydroxylysine.The chemistry of the lysine-derived collagen cross-links is relatively complex, with collagen type, tissue location, and age of the protein all influencing the range of cross-links present (1). In bone, cartilage, and tendon, extensive hydroxylation of telopeptide lysine residues leads to the formation of hydroxylysyl aldehydes. These aldehydes interact with the ⑀ amino group of lysine or hydroxylysine residues from the adjacent helix to initially form Schiff bases that can chemically rearrange to form a more stable, keto-imine difunctional cross-link. In skin, the telopeptides are not hydroxylated, and no such rearrangement of the Schiff base cross-link occurs. These two different chemistries, dependent on telopeptide lysine hydroxylation, lead to the formation of different mature cross-links by further reaction of the difunctional cross-links in a tissuespecific manner: hydroxylation of the telopeptide lysine residues appears to be accomplished by tissue-specific enzymes, distinct from those that hydroxylate lysines in the helix (2). For the hydroxylysyl aldehyde pathway (bone, cartilage, and tendon), the difunctional cross-links can combine with another hydroxylysine aldehyde-derived component to form a pyridinium cross-link. These cross-links have been extensively characterized, and mechanisms of formation have been proposed (3, 4). However, many studies of cross-linked collagen peptides have implied the presence of other trifunctional cross-links because of a lack of stoichiometric amounts of the pyridinium compounds (5, 6). The possible presence of pyrrolic components in collagen arose from the observation that reaction of bone with p-dimethylaminobenzaldehyde gave a pink color characteristic of pyrroles (7); these reactive species were named Ehrlich chromogens. Later experiments used diazo-affinity columns (also consistent with a pyrrolic structure) to covalently bind the Ehrlich chromogen-c...