Benthic boundary layer (BBL) communities are a taxonomically and functionally diverse but poorly known component of deep‐sea environments. We investigated macrofaunal assemblages across the upper slope of the Chatham Rise (CR) in the south‐western Pacific in relation to location, depth and sediment variables. Using data from the TAN1116 voyage to the CR in austral spring 2011, we assessed variation in abundance, faunal composition and diversity of three BBL compartments: fully suprabenthic taxa, taxa with suprabenthic affinities and fully epibenthic taxa across taxonomic levels (phylum, class, order, family, genus and species). In total, eight samples were taken using an epibenthic sledge across three areas on the CR (Mernoo Gap, CR North and CR South) and at two depth ranges (400–600 and 900–1,000 m) distributed along a north to south as well as east to west axis, crossing different productivity gradients. In contrast to previous studies from the CR, there was no significant correlation between macrofaunal densities and sediment variables or depth. Species diversity of isopods and tanaidaceans was average to high, compared to other geographic regions, but did not show any significant pattern with location or depth. Most species in these two groups (~82%) were new to science, probably reflecting the paucity of sampling and taxonomic study of these faunal components in New Zealand waters. Our results suggest employing finer‐scale investigations across a range of temporal and spatial scales and at finer taxonomic resolution would greatly further our knowledge and understanding of patterns and processes shaping deep‐sea BBL community structure.