To clarify the effects of microwave roasting on the distribution of tocopherols and FA of phospholipids within soybeans, whole soybeans (Glycine max) were treated by microwave and further evaluted as compared to a raw sample. Tocopherol homologs, measured using HPLC, and phospholipid profiles, quantified with GC, were determined in the seed coat, the embryonic axis, and sections of cotyledons separated from three cultivars. The tocopherols were predominantly detected in the axis, followed by the cotyledons, and then very little in the coat. As much as 25% of the individual tocopherols originally present in the coat were lost at 12 min of roasting, whereas <25% was lost in the cotyledons and the axis after 20 min of roasting. The greatest rate of phospholipid loss (P < 0.05) was observed in PE, followed by PC and PI, and their changing patterns were more pronounced in the coat than in the cotyledons or the axis. Thus, tocopherol content and phospholipid profiles change with microwave roasting according to tissue.Soybeans are rich in protein and oil. Many East Asian countries, including Japan, have a long history of utilizing soybeans in great quantities as essential protein foods for humans. However, soybeans contain antinutritional factors such as trypsin inhibitor (1), which is thought to reduce protein digestibility and to cause pancreatic hypertrophy. Several processes, e.g., heat treatment (steaming or boiling), dry roasting (2), homogenization, and hydrolysis (3) can be used to increase the biological utilization and digestibility of soybeans. For heating purposes, microwave energy is more efficient than traditional methods (4). The characteristic feature of microwave heating is that it ensures homogeneous operation in the whole volume of substance, with great penetrating depth (5). However, the differential heating behavior of food components can result in severely uneven heating of certain foods rich in fats and protein (6). We suggested that microwave heating is an effective means for inactivating trypsin inhibitors in whole soybeans and also for making fullfat soy flour from raw beans with a high vitamin E content (7).Microwave energy penetrates a food material and produces heat internally, which leads to faster heating rates and shorter processing times. In fact, microwaves are used in the food industry for thawing, drying, and baking as well as for other applications such as sterilizing and pasteurizing many types of foods (8). Microwave ovens are credited with rapid heating rates and high efficiency, because of their high penetration power (6). Phospholipids are the major constituents of cell membranes in soybeans, and they have a high degree of unsaturation. However, very little work has been reported on how microwave energy affects distribution of tocopherols in relation to FA composition of various acyl lipids within the three structural parts of a soybean.The objective of this research was to evaluate the composition of tocopherols and FA distribution of major phospholipids in the seed coat, axis,...