Mutation affects the expression of genes and the function of the proteins that they encode. Of relevance to safety assessments, somatic cell mutation in key endogenous tumor suppressor genes and the genes for cell-cycle regulators drives the carcinogenesis process. Safety assessments, though, typically measure mutations in reporter genes that have easily identifiable phenotypes. Mutation in genes that contribute to the biosynthesis of the anchor molecule glycosylphosphatidylinositol (GPI) may dramatically alter the complement of cell-surface markers at the exterior of the cell. Such aberrant mutant cells, deficient in GPI anchors and specific GPI-anchored cell-surface markers, can be differentiated from wild-type cells and enumerated on high-throughput flow cytometers. In humans, one of the enzymes involved in the synthesis of GPI is coded by the endogenous X-linked PIG-A gene, which makes flow cytometry-based analysis of GPIdeficient cells particularly sensitive to the detection of mutation in this gene. Hematopoietic cells and the peripheral blood, in general, are the most amenable cell types for detecting mutation in the PIG-A gene: blood cells don't require extraordinary steps for antibody labeling and flow analysis. Labeling reagents (antibodies and stains) for the PIG-A assay are readily available from commercial sources, which makes most research and clinical laboratories proficient in the use of flow cytometry capable of detecting PIG-A mutation in human blood.