Binding of chromosomal high mobility group 1 protein (HMG1) to UV-damaged DNA has been studied with oligonucleotides containing a single dipyrimidine site for formation of UV photolesions. Irradiation of an oligonucleotide with unique TT dinucleotide resulted in generation of cyclobutane pyrimidine dimer with no evidence for induction of (6-4) photoproducts, whereas the analysis of irradiated TC-containing oligonucleotide detected (6-4) photoproducts but not cyclobutane pyrimidine dimers. Mobility shift assays have revealed that HMG1 protein binds preferentially to irradiated TT and TC oligonucleotides. Photoreversal of cyclobutane pyrimidine dimers with DNA photolyase and hydrolysis of the (6-4) photoproducts with hot alkali substantially reduced but did not eliminate binding of HMG1. The protein, therefore, appears to bind the two main types of UV damages in DNA, but some other photolesion(s) contributes to the preferential binding of HMG1 to irradiated DNA. By quantifying gel shift assays and considering the efficiencies of lesion formation, we determined dissociation constants of 1.2 ؎ 0.5 and 4.0 ؎ 1.5 M for irradiated TT and TC oligonucleotides, respectively, and 70 ؎ 20 M for the control non-irradiated probes. Tryptic removal of the acidic COOH-terminal domain of HMG1 significantly affected binding of the protein to both irradiated and intact oligonucleotides. The potential role of HMG1 in recognition of the UV lesions in DNA is discussed.High mobility group proteins 1 and 2 (HMG1 and -2) 1 are abundant chromosomal proteins found in a variety of eukaryotic species. Despite their early identification and biochemical characterization (1) and subsequent implication in a number of cellular events, their functions are still unknown (for reviews see Refs. 2 and 3). The interest in these proteins sharply increased in the early 1990s with the discovery of a new kind of eukaryotic protein domain involved in interactions with DNA (4), which displayed sequence similarity to two homologous repeats of an 80-amino acid sequence in HMG1. This motif called HMG box was found in a wealth of less abundant eukaryotic proteins, mainly general transcription factors and gene-specific transcriptional activators (reviewed in Refs. 3 and 5). A general characteristic of these proteins is their ability to bind bent DNA or to induce bending in DNA independent of sequence or the existence of prebent regions (6). Thus, HMG1 binds preferentially to distorted DNA sites such as synthetic cruciform DNA structures (7,8) and the lesions formed on DNA by the anticancer drug cisplatin (9, 10). The ability of HMG box-containing proteins to mediate bending in linear duplex DNA was demonstrated by several approaches (11-13). In addition, these proteins can constrain negative supercoils in plasmid DNA (14 -16) and can serve as "architectural" elements in the assembly of higher order nucleoprotein complexes (5,11,13,(17)(18)(19).The finding that HMG1 binds more tightly to cisplatin-damaged DNA than to unmodified B form DNA implies that the signal f...