ABSTRACT.We have developed a next-generation data acquisition system, MESSIA5 (Modularized Extensible System for Image Acquisition), which comprises the digital part of a focal plane array controller. The new data acquisition system was constructed based on a 64 bit, 66 MHz PCI (peripheral component interconnect) bus architecture and runs on an x86 CPU computer with (non-real-time) Linux. The system, including the CPU board, is placed at the telescope focus, and standard gigabit Ethernet is adopted for the data transfer, as opposed to a dedicated fiber link. During the summer of 2002, we installed the new system for the first time on the Subaru prime-focus camera Suprime-Cam and successfully improved the observing performance.