“…Limitations of microscopy‐led diagnoses, which include the need for specific parasitological competence and low sample throughput, are yet to be outweighed by the difficulties associated with retrieving genomic DNA from environmental Eimeria samples (Allen & Fetterer, 2002; Vrba et al, 2010). Several techniques based on the polymerase chain reaction (PCR) have been developed to fingerprint avian Eimeria species via the amplification of small subunit ribosomal RNA ( 18S rRNA ) (Stucki et al, 1993; Tsuji et al, 1999), internal transcribed spacer ( ITS )‐1 (Clark et al, 2016; Güven et al, 2013; Hamidinejat et al, 2010; Haug et al, 2008; Khaier et al, 2015; Lew et al, 2003; Nguyen et al, 2021; Sultan et al, 2022; You, 2014), ITS ‐2 (Clark et al, 2016; Gasser et al, 2001; Jenkins et al, 2006; Lien et al, 2007; Meireles et al, 2004), mitochondrial cytochrome c oxidase 1 ( COI ) (Ogedengbe et al, 2011) and sequence characterised amplified region (SCAR) markers (Fernandez et al, 2003; Gadelhaq et al, 2015; Loo et al, 2019; Olufemi et al, 2020; Rao et al, 2012; Siddiki et al, 2014; Taha et al, 2021).…”