The results from mass spectrometry of clusters sputtered from Cs + irradiated single-walled carbon nano-tubes (SWCNTs) as a function of energy and dose identify the nature of the resulting damage in the form of multiple vacancy generation. For pristine SWCNTs at all Cs + energies, C 2 is the most dominant species, followed by C 3 , C 4 and C 1 . The experiments were performed in three stages: in the first stage, Cs + energy E(Cs + ) was varied. During the second stage, the nanotubes were irradiated continuously at E(Cs + ) = 5 keV for 1,800 s. Afterwards, the entire sequence of irradiation energies was repeated to differentiate between the fragmentation patterns of the pristine and of heavily irradiated SWCNTs. The sputtering and normalized yields identify the quantitative and relative extent of the ion-induced damage by creating double, triple and quadruple vacancies; the single vacancies are least favored. Sputtering from the heavily irradiated SWCNTs occurs not only from the damaged and fragmented nanotubes, but also from the inter-nanotube structures that are grown due to the accumulation of the sputtered clusters. Similar irradiation experiments were performed with the multi-walled carbon nanotubes; the results confirmed the dominant C 2 followed by C 3 , C 4 and C 1 .