Hepatocellular carcinoma (HCC) is a prevalent cancer with an extremely high mortality rate attributed to HCC metastasis, which is the major cause of tumor recurrence and organ failure. Presence of tumor thrombi in the portal veins (venous metastases) is a clinicopathological feature of metastatic HCCs. In this study, we analyzed the microRNA (miRNA) expression profiles of nontumorous livers, primary HCCs, and venous metastases in the same livers from 20 HCC patients by way of TaqMan low-density array (TLDA) and identified the precise alterations of miRNA expression from nontumorous livers to primary HCCs and venous metastases globally. By unsupervised clustering analysis, nontumorous livers were distinctly segregated from primary HCCs and venous metastases, whereas no discernible difference in the expression pattern could be found between primary HCCs and venous metastases. However, a marked global reduction of miRNA expression levels was detected in venous metastases, as compared with primary HCCs. These data suggest that miRNA deregulation is an early event in liver carcinogenesis and the later global miRNA down-regulation aggravates the preexisting miRNA deregulation to further promote HCC metastasis. Conclusion: Our study has enriched the current understanding of the deregulation of miRNAs in HCC progression and highlighted the sequential and distinctive alterations of miRNA expression in primary HCC and venous metastasis formation. (HEPATOLOGY 2012;55:1453-1461 H epatocellular carcinoma (HCC), the most common primary liver cancer, is an extremely lethal disease that causes about 700,000 deaths worldwide annually.1 The high mortality rate of HCC is mainly related to intra-and extrahepatic metastasis leading to liver and extrahepatic organ failures. Although tumor resection or liver transplantation is the most efficient treatment option for HCC patients, the majority of patients are unsuitable for the operation because either metastasis has already occurred at the time of diagnosis or patients have poor liver function. Furthermore, HCC is highly recurrent and intra-hepatic metastasis is the major cause of tumor relapse after resection.2 Therefore, metastasis remains a major obstacle to HCC treatment. Understanding of the mechanisms underlying metastasis is important to the development of better diagnostic platforms and therapeutic options for HCC patients. Metastasis is a complicated disease which involves multiple steps: invasion out of the primary tumor site, intravasation, survival in the circulatory system, extravasation, and colonization at secondary site. Cancer cells that are able to accomplish these steps have higher metastatic capability due to accumulation of genetic and epigenetic alterations including microRNA (miRNA) 4 It is estimated that miRNAs regulate the expression of one-third of human genes, thereby directing a wide repertoire of biological mechanisms in cells.5 Accumulating evidence has demonstrated that miRNAs contribute to aberrant gene expression in cancer initiation and progressio...