We introduce topological invariants of semi-decompositions (e.g. filtrations, semi-group actions, multi-valued dynamical systems, combinatorial dynamical systems) on a topological space to analyze semi-decompositions from a dynamical systems point of view. In fact, we construct Morse hypergraphs and abstract weak elements of semi-decompositions. Moreover, the Morse hyper-graphs of the set of sublevel sets of a Morse function of a compact manifold is the Reeb graph of such function as abstract multi-graphs.