“…Presently, the food chains of these lakes is the focus of intense scientific discussion as the lakes host toxic cyanobacteria, which when consumed by Lesser Flamingos, weakens the birds, and therefore makes them susceptible to attacks by infective diseases (Motelin et al, 2000;Codd et al, 2003;Krienitz et al, 2003;Ballot et al, 2004Ballot et al, , 2005Koenig, 2006;Kotut et al, 2006;Lugomela et al, 2006;. Recently, high densities of Microcystis in lakes Bogoria, Elmentaita, and Nakuru were reported and related to mass die offs of Lesser Flamingos (Githaiga, 2003;Ndetei & Muhandiki, 2005;Stewart et al, 2008). For the last 10 years, we have discussed with colleagues involved in planktological research and those in wildlife protection agencies across different countries of East Africa, the possible occurrence of Microcystis in alkaline saline lakes and came to the conclusion that there is a high level of uncertainty.…”