The fate of fenthion was examined in laboratory microcosms to describe interaction between sediment and biodegradation in the field. A mathematical model also was calibrated to calculate distribution of fenthion in microcosms. Intact sediment cores, with and without a salt‐marsh plant, Juncus roemerianus (black needlerush), were placed in microcosm vessels to simulate an undisturbed sediment bed of a salt marsh and areas containing Juncus. In a formalin‐sterilized microcosm without plants, fenthion disappeared exponentially from the water column with a half‐life of 105.0 h. Fenthion had a half‐life of 35.5 h in a nonsterile microcosm without plants. In the nonsterile microcosm with plants, the half‐life was slightly shorter, 33.2 h. The sediment was fractionated into 0.5 cm layers. Fenthion was found at greater sediment depths in nonsterile systems than predicted by diffusion and sorption in the sterile microcosm, possibly because of bioturbation. Distribution of fenthion in sediment was not appreciably different between microcosms with and without plants. Fenthion appeared to be biodegraded in the upper (1 to 7 mm) sediment layers.