Localized proton MRS was used to quantify cerebral metabolite concentrations in the thalamus of mice to assess the variation of major metabolites during brain development.Three sets of C57BL/6 mice were followed in a longitudinal study from a very early phase at post-natal day four (p4) until day 57 (p57). Experiments were conducted in accordance with Canadian animal care guidelines on a 7-Tesla small animal MR system. Specimens were examined under inhalation anesthesia using single-voxel MRS. A cubic volume with edge lengths of 1.9 mm was placed in the thalamus region of animals and point-resolved spectroscopy (PRESS) spectra were acquired with the following parameters (TR/TE/NEX=2500 ms/20 ms/600; Bandwidth=4000 Hz). Absolute metabolite quantification using LCModel was obtained by assigning water signal intensity measured by MRS to water concentrations determined by histobiochemical analysis and interpolation.Optimized anesthesia, immobilization, and careful monitoring led to a survival rate of 100% throughout the study. The brain water content was 84.8, 78.8, and 77.6% at p12, p31, and p66. Variation of metabolites revealed similar patterns for the total of creatine and phosphocreatine (tCr), glutamate and glutamine (Glx), and the total of N-acetyl aspartic compounds (tNAA), with steady increases from p4 to reaching a plateau after p21. The total of Cholinecontaining compounds (tCho) and myo-inositol (Ins) had high concentrations at early exam points, decreased to minima between p14 and p19, and increased to adult levels thereafter. Taurine (Tau) had highest levels at p4, decreased persistently but fast in the early development and slow in the later stages of brain development.Our results indicate that biological variance must be considered if results from studies on mouse models of pathologies are compared with results from healthy controls during development. This aspect seems to be especially important between p10 and p21. Due to the high temporal resolution used at early time points in our study and the inclusion of multiple groups of animals at time points, our data contribute important aspects to the existing literature about mouse brain development.multi-voxel approach in C57BL/6 mice, and in vitro with whole brain samples from C57BL/6 mice [11,12]. The four in vivo studies used different approaches for absolute metabolite quantification, namely advanced method for accurate, robust and efficient spectral fitting (AMARES), and linear combination of model spectra (LCModel). Additionally, the particular time points, the intervals between them, and the brain regions examined varied between the studies. While the results of studies seem fairly homogeneous, distinct differences in reported development patterns were found in a study by Larvaron et al. [8][9][10][11]. Differences between the study results may be attributed to the respective employed quantification strategies, e.g., the choice of using an external quantification or measured brain water content as