Background: The non-invasive characterization of glioma metabolites would greatly assist the management of glioma patients in the clinical setting. This study investigated the applicability of intra-subject inter-metabolite correlation analyses for differentiating glioma malignancy and proliferation.Methods: A total of 17 negative controls (NCs), 39 low-grade gliomas (LGGs) patients, and 25 highgrade gliomas (HGGs) subjects were included in this retrospective study. Amide proton transfer (APT) and magnetization transfer contrast (MTC) imaging contrasts, as well as total choline/total creatine (tCho/tCr) and total N-acetylaspartate/total creatine (tNAA/tCr) ratios quantified from magnetic resonance spectroscopic imaging (MRSI) were co-registered voxel-wise and used to produce three intra-subject inter-metabolite correlation coefficients (IMCCs), namely, R APT vs. MTC , R APT vs. tCho/tCr , and R MTC vs. tNAA/tCr . The correlation between the IMCCs and tumor grade and Ki-67 labeling index (LI) for tumor proliferation were explored. The differences in the IMCCs between the three groups were compared with one-way analysis of variance (ANOVA). Finally, regression analysis was used to build a combined model with multiple IMCCs to improve the diagnostic performance for tumor grades based on receiver operator characteristic curves.Results: Compared with the NCs, gliomas showed stronger inter-metabolic correlations. R APT vs. MTC was significantly different among the three groups (NC vs. LGGs vs. HGGs: −0.18±0.38 vs. −0.40±0.34 vs. −0.70±0.29, P<0.0001). No significant differences were detected in R MTC vs. tNAA/tCr among the three groups. R APT vs. MTC and R APT vs. tCho/tCr correlated significantly with tumor grade (R=−0.41, P=0.001 and R=0.448, P<0.001, respectively).However, only R APT vs. MTC was mildly correlated with Ki-67 (R=−0.33, P=0.02). R APT vs. MTC and R APT vs. tCho/tCr achieved areas under the curve (AUCs) of 0.754 and 0.71, respectively, for differentiating NCs from gliomas; and 0.77 and 0.78, respectively, for differentiating LGGs from HGGs. The combined multi-IMCCs model improved the correlation with the Ki-67 LI (R=0.46, P=0.0008) and the tumor-grade stratification with AUC increased to 0.85 (sensitivity: 80.0%, specificity: 79.5%).Conclusions: This study demonstrated that glioma patients showed stronger inter-metabolite correlations than control subjects, and the IMCCs were significantly correlated with glioma grade and proliferation. The multi-IMCCs combined model further improved the performance of clinical diagnosis.