Chitinase,
a crucial component of the fungal cell wall and septa,
plays an important role in fungal germination by hydrolyzing chitin
to provide carbon and energy for fungal growth and reproduction. In
this study, we initially screened dibenzylideneacetone (DBA), a small
molecule with inhibitory activity against Botrytis cinerea Chitinase, exhibiting an IC50 of 13.10 μg/mL. By
constructing a three-dimensional (3D) model of the B. cinerea Chitinase and utilizing computational biology approaches, we found
DBA bound to the active site pocket and formed strong π–π
interactions and hydrophobic interactions with Chitinase, indicative
of its competitive inhibitory mode. Site-directed mutagenesis also
revealed that TRP-382, TRP-135, and ALA-215 were key amino acid residues
involved in DBA binding. Subsequent antifungal assays showed that
DBA had an MIC of 32 μg/mL against B. cinerea and EC50 values of 16.29 and 14.64 μg/mL in inhibiting
mycelial growth and spore germination, respectively. Importantly, in vivo experiments demonstrated that DBA treatment significantly
extended the shelf life of cherry tomatoes by 2-fold. Therefore, DBA
represents a promising antifungal agent for fruit preservation applications.