Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae)

Zhang, Xianzhi; Zeng, Chun‐Xia; Ma, Ping; Haevermans, Thomas; Zhang, Yu‐Xiao; Zhang, Lina; Guo, Zhenhua; D, Li

doi:10.1016/j.ympev.2015.11.025

Cited by 70 publications

(117 citation statements)

References 82 publications

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“…Recent work by Goh et al (2013), Chokthaweepanich (2014), Zhang et al (2016), andWong et al (2016) has refined phylogenetic relationships within the Paleotropical clade of the Bambuseae and produced some changes in classification. The generic classifications of Kellogg (2015) and Soreng et al (2015b) are very similar, again with the annotation of non-monophyletic genera in Kellogg (2015) but not in Soreng et al (2015b).…”

Section: Bambusoideaementioning

confidence: 99%

A worldwide phylogenetic classification of the Poaceae (Gramineae) II: An update and a comparison of two 2015 classifications

Soreng

Peterson

Romaschenko

et al. 2017

J of Sytematics Evolution

425

540

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We present a new worldwide phylogenetic classification of 11 506 grass species in 768 genera, 12 subfamilies, seven supertribes, 52 tribes, five supersubtribes, and 90 subtribes; and compare two phylogenetic classifications of the grass family published in 2015 (Soreng et al. and Kellogg). The subfamilies (in descending order based on the number of species) are Pooideae with 3968 species in 202 genera, 15 tribes, and 30 subtribes; Panicoideae with 3241 species in 247 genera, 13 tribes, and 19 subtribes; Bambusoideae with 1670 species in 125 genera, three tribes, and 15 subtribes; Chloridoideae with 1602 species in 124 genera, five tribes, and 26 subtribes; Aristidoideae with 367 species in three genera, and one tribe; Danthonioideae with 292 species in 19 genera, and one tribe; Micrairoideae with 184 species in eight genera, and three tribes; Oryzoideae with 115 species in 19 genera, four tribes, and two subtribes; Arundinoideae with 40 species in 14 genera, two tribes, and two subtribes; Pharoideae with 12 species in three genera, and one tribe; Puelioideae with 11 species in two genera, and two tribes; and the Anomochlooideae with four species in two genera, and two tribes. We also include a radial tree illustrating the hierarchical relationships among the subtribes, tribes, and subfamilies. Newly described taxa include: supertribes Melicodae and Nardodae; supersubtribes Agrostidodinae, Boutelouodinae, Gouiniodinae, Loliodinae, and Poodinae; and subtribes Echinopogoninae and Ventenatinae.

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Section: Bambusoideaementioning

confidence: 99%

A worldwide phylogenetic classification of the Poaceae (Gramineae) II: An update and a comparison of two 2015 classifications

Soreng

Peterson

Romaschenko

et al. 2017

J of Sytematics Evolution

425

540

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“…Wen is stenochoric and endemic to southern Taiwan Island, with important ornamental value for its apically drooping appearances (Li et al 2006). This species plays a crucial role in understanding the intriguing biogeographic pattern of Ampelocalamus, an obviously discontinuous distribution of mainland China-Taiwan Island-Hainan Island (Wu et al 2010;Zhang et al 2016a), as well as the spatial and temporal diversification of temperate woody bamboos (Arundinarieae) in Bambusoideae (Zhang et al 2016b). In this study, we assembled and characterized the complete chloroplast (cp) genome of A. naibunensis via genome skimming approach (Straub et al 2012), which will provide additional temp-spatially evolutionary information of the special forestry-adapted group of the grass family.…”

mentioning

confidence: 99%

“…We found that A. naibunensis clustered in the Chimonocalamus clade (III), being sister to C. longiusculus with high-support value (Figure 1). Ampelocalamus naibunensis is distantly related to A. calcareus, the earliest divergent lineage (XI) of Arundinarieae (Zhang et al 2016b). The phylogenetic relationships of the 11 major lineages (I to XI) of Arundinarieae recovered here is congruent with Ma et al (2014 The short internodes connected by long branches in the ML tree suggested a probable recent rapid radiation of Arundinarieae (Zhang et al 2016b).…”

mentioning

confidence: 99%

Genome skimming reveals the complete chloroplast genome of Ampelocalamus naibunensis (Poaceae: Bambusoideae: Arundinarieae) with phylogenomic implication

Zhang

Chen

2016

Mitochondrial DNA Part B

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Ampelocalamus naibunensis is one drooping bamboo with an important ornamental value endemic to Taiwan Island. To date, the genetic and genomic information of this species is little known. Here we characterized the complete chloroplast genome of A. naibunensis using genome skimming approach. The complete chloroplast genome is 139,860 bp, with a large single copy region (LSC) of 83,380 bp and a small single copy region (SSC) of 13,014 bp separated by a pair of inverted repeats (IRs) of 21,822 bp. The genome encodes a total of 129 genes, of which 111 are unique, containing 76 protein-coding genes, 4 ribosomal RNAs and 31 transfer RNAs. Sixteen distinct genes contain one or two introns, and the GC content of the cp genome is 38.9%. Phylogenomic analysis strongly supports the placement of A. naibunensis in the Chimonocalamus lineage (III), distantly related to A. calcareus (XI) within temperate woody bamboos.

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“…Nonetheless, Ampelocalamuscalcareus was sister to all the other taxa of the tribe Arundinarieae in plastid and nuclear gene trees (Yang et al 2013, Ma et al 2014, Attigala et al 2016, Zhang et al 2016). The morphological similarity between the distantly related A.calcareus and those three genera ( Ampelocalamus , Drepanostachyum and Himalayacalamus ) demonstrated that morphological characters had undergone complex evolutionary trajectories in those taxa and also in the whole tribe and some important features in bamboo taxonomy were homoplastic or convergent that was illustrated in other studies of Arundinarieae and some tropical woody bamboos (Yang et al 2008, Tyrrell et al 2012, Attigala et al 2016).…”

Section: Discussionmentioning

confidence: 96%

“…Kuruna . However, relationships amongst them remain largely uncertain (Triplett and Clark 2010, Zeng et al 2010, Yang et al 2013, Attigala et al 2014, 2016, Ma et al 2014, Zhang et al 2016, Zhang et al 2017). Those lineages are strongly inconsistent with the morphological classification at the generic and subtribal levels (Keng and Wang 1996, Li 1997, 1999, Ohrnberger 1999).…”

Section: Introductionmentioning

confidence: 99%

A new genus of temperate woody bamboos (Poaceae, Bambusoideae, Arundinarieae) from a limestone montane area of China

Zhang¹,

Ma²,

D³

2018

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Ampelocalamuscalcareus is a climbing and slender bamboo, known from south Guizhou, China. This species grows in broadleaved forests of limestone montane areas. Recent molecular phylogenetic analyses demonstrated that A.calcareus was sister to all other lineages of the tribe Arundinarieae rather than a member of Ampelocalamus. The morphological features and habitats of A.calcareus and related genera including Ampelocalamus, Drepanostachyum and Himalayacalamus were compared and discussed. The characteristics of the branch complements, nodes and foliage leaves distinguish A.calcareus from morphologically similar taxa. On the basis of molecular and morphological evidence, we propose to establish a new genus, Hsuehochloa, to accommodate A.calcareus and to honour the late Chinese bamboo taxonomist Chi-Ju Hsueh (Ji-Ru Xue). In addition, we describe the inflorescence of Hsuehochloa for the first time.

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Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae)

Cited by 70 publications

References 82 publications

A worldwide phylogenetic classification of the Poaceae (Gramineae) II: An update and a comparison of two 2015 classifications

A worldwide phylogenetic classification of the Poaceae (Gramineae) II: An update and a comparison of two 2015 classifications

Genome skimming reveals the complete chloroplast genome of Ampelocalamus naibunensis (Poaceae: Bambusoideae: Arundinarieae) with phylogenomic implication

A new genus of temperate woody bamboos (Poaceae, Bambusoideae, Arundinarieae) from a limestone montane area of China

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