Multi-omics reveals the molecular mechanism of muscle quality changes in common carp (Cyprinus carpio) under two aquaculture systems

Wang, Lei; Wang, Lingran; Liu, Chang; Ma, Fangran; Huang, Jintai; Jin, Zhan; Zhang, Lan; Feng, Di; Zhang, Meng; Yu, Miao; Jiang, Hongxia; Qiao, Zhigang

doi:10.1016/j.cbd.2024.101290

Comparative Biochemistry and Physiology Part D: Genomics and Pr

2024

DOI: 10.1016/j.cbd.2024.101290

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Multi-omics reveals the molecular mechanism of muscle quality changes in common carp (Cyprinus carpio) under two aquaculture systems

Lei Wang,

Lingran Wang,

Chang Liu

et al.

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Cited by 2 publications

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Effect of exercise intensity on growth performance, serum biochemistry parameters, liver antioxidant capacity, and intestinal health of common carp (Cyprinus carpio) in recirculating aquaculture system

Wang,

Liu,

Feng

et al. 2025

Aquaculture

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Effect of exercise intensity on growth performance, serum biochemistry parameters, liver antioxidant capacity, and intestinal health of common carp (Cyprinus carpio) in recirculating aquaculture system

Wang,

Liu,

Feng

et al. 2025

Aquaculture

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Unveiling the Molecular Mechanisms Regulating Muscle Elasticity in the Large Yellow Croaker: Insights from Transcriptomics and Metabolomics

Liu,

Qiao,

Wang

et al. 2024

IJMS

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The large yellow croaker (Larimichthys crocea) is an important economic fish in China. However, intensive farming practices, such as high stocking densities, suboptimal water quality, and imbalanced nutrition, have led to a decline in muscle quality. Muscle elasticity is a key texture property influencing muscle quality. Herein, transcriptomic and metabolomic analyses were performed on four groups: male high muscle elasticity (MEHM), female high muscle elasticity (MEHF), male low muscle elasticity (MELM), and female low muscle elasticity (MELF), to explore the molecular regulation underlying muscle elasticity in the large yellow croaker. Transcriptomics identified 2594 differentially expressed genes (DEGs) across the four groups, while metabolomics revealed 969 differentially expressed metabolites (DEMs). Association analysis indicated that the valine, leucine, and isoleucine biosynthesis pathways were significantly enriched between the MELF and MEHF groups; 2-Oxoisovalerate and L-Valine were DEMs; and the gene encoding L-threonine ammonia-lyase was a DEG. In the MELM and MEHM groups, pathways such as arginine biosynthesis; arginine and proline metabolism; and valine, leucine, and isoleucine degradation were significantly enriched. 4-guanidinobutanoate, L-aspartate, N-acetylornithine, and L-leucine were among the DEMs, while the DEGs included glul, gls, srm, hmgcs, and aacs. These findings provide insights into the molecular mechanisms controlling muscle elasticity, representing a theoretical foundation to breed high-quality large yellow croakers.

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Multi-omics reveals the molecular mechanism of muscle quality changes in common carp (Cyprinus carpio) under two aquaculture systems

Cited by 2 publications

References 50 publications

Effect of exercise intensity on growth performance, serum biochemistry parameters, liver antioxidant capacity, and intestinal health of common carp (Cyprinus carpio) in recirculating aquaculture system

Effect of exercise intensity on growth performance, serum biochemistry parameters, liver antioxidant capacity, and intestinal health of common carp (Cyprinus carpio) in recirculating aquaculture system

Unveiling the Molecular Mechanisms Regulating Muscle Elasticity in the Large Yellow Croaker: Insights from Transcriptomics and Metabolomics

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