Recently there has been an increasing interest in using organic materials for thermoelectric applications due to the noteworthy advantages of mechanical flexibility, low-cost synthesis, and solution processability. While the thermal conductivity of organic semiconductors is known to be small, very few theoretical works are available to predict thermoelectric properties of organic semiconductors and guide experimental efforts. In this work, we studied the thermoelectric properties (electrical conductivity, Seebeck coefficient, and power factor) of quasi-one-dimensional (Q1D) self-assembled molecular nanowires (NWs) based on a rigorous evaluation of the Kubo formula using the Holstein model. The molecular NWs are composed of either one-dimensional conducting polymer chains, coupled by covalent bonds, or linear stacks of planar building blocks, held together by van der Waals or π–π interactions; these are also known as molecule metals (or semiconductors), charge transfer salts, or π-stacked organic semiconductors. The dependence of thermoelectric properties on a variety of physical parameters, including intersite coupling, electron–phonon interaction, chemical potential (doping concentration), and temperature, are systematically studied. We found that the thermoelectric properties are strongly affected by the intersite coupling and the dielectric constant. If the phonon thermal conductivity is assumed to be 0.2 W/mK, the thermoelectric figure of merit (ZT) of a molecular NW can reach 15.2, which is much larger than the best known inorganic thermoelectric materials obtained so far. Finally, we applied our model to study the thermoelectric properties of 1D polymer chains of P3HT and PEDOT:PSS. The power factor reaches 500 μW/cmK for a PEDOT:PSS chain. This study indicates that low-dimensional conducting polymers could be promising high-ZT materials. The theoretical study presented in this work could be useful for guiding the searchfor high-efficiency thermoelectric materials that are potentially low-cost and compatible with environmental-friendly processing.