The lack of a fundamental understanding of microcosmic reaction mechanisms for elemental mercury (Hg 0 ) accommodation over a mineral selenide significantly impedes evaluations of their performances and potential applications for Hg 0 adsorption from coal combustion flue gas. Hence, in this work, Hg 0 adsorption profiles and conversion pathways were established for heterogeneous Hg 0 conversion over an efficient and cost-effective mineral selenide, i.e., copper selenide (CuSe). Hg 0 was found to be first physiosorbed by Cu-top sites over an intact CuSe(001) surface to form a Hg−Cu amalgam, which was then converted into stably chemisorbed mercury selenide (HgSe) when encountering surface active ligands such as Se monomer. The reaction pathway for Hg 0 adsorption and transformation over CuSe(001) surface was Hg 0 → Hg−Cu → HgSe. This proposed road map for Hg 0 conversion was further proven by experimental results, in which the formation of Hg−Cu amalgam over CuSe surface was observed. The influences of typical coal combustion flue gas such as oxygen (O 2 ), sulfur dioxide (SO 2 ), and water vapor (H 2 O) on Hg 0 capture over the CuSe(001) surface were also investigated. O 2 was found to exhibit negligible influence on Hg 0 removal, while SO 2 and H 2 O had slight detrimental impacts on the physisorption stage of Hg 0 on the Cu-top site. These results were also cross-checked by experimental observations to fully justify the accuracy of the predictions. This work thus gives in-depth microcosmic understandings on Hg 0 removal over CuSe and guides further design of efficient CuSe based sorbent for Hg 0 capture from coal combustion flue gas.