High-dimensional parabolic partial integro-differential equations (PIDEs) appear in many applications in insurance and finance. Existing numerical methods suffer from the curse of dimensionality or provide solutions only for a given space-time point. This gave rise to a growing literature on deep learning based methods for solving partial differential equations; results for integro-differential equations on the other hand are scarce. In this paper we consider an extension of the deep splitting scheme due to Beck et al. [4] and Germain et al. [15] to PIDEs. Our main contribution is a convergence analysis of the scheme. Moreover we discuss several test case studies to show the viability of our approach.