The proposed work segment the tumor portion with substructure from MRI Multimodal brain tumor images using image fusion techniques. The preprocessing work is done by using Piece-wise linear transformation, to enhance the tumor region. The proposed work classify the brain tumor image as tumor or non-tumor by convolutional neural network (CNN) model, then extracts the whole tumor portion by largest connected component (LCC) and finally segments the substructures. The segmented substructure of tumor portion is validated with ground truth in qualitative and quantitative analysis. The experiments are done using BraTS datasets and performance metrics such as structural similarity index measure (SSIM), accuracy, dice coefficient (DC), and peak signal to noise ratio (PSNR). This metrics are used to validate the shape of the tumor portion. The metrics gives better results for the proposed work.