Balloon catheter endothelial denudation in new Zealand white rabbits fed high cholesterol diet is a validated atherosclerosis model. Well-characterized in terms of atherosclerosis induction and progression, the metabolic changes associated with the atherosclerosis progression remain indeterminate. Non-targeted metabolomics permits to develop such elucidation and allows to evaluate the metabolic consequences of colchicine treatment, an anti-inflammatory drug that could revert these changes. 16 rabbits underwent 18 weeks of atherosclerosis induction by diet and aortic denudation. Thereafter animals were randomly assigned to colchicine treatment or placebo for 18 weeks while on diet. Plasma samples were obtained before randomization and at 36 weeks. Multiplatform (GC/ MS, CE/MS, RP-HPLC/MS) metabolomics was applied. Plasma fingerprints were pre-processed, and the resulting matrixes analyzed to unveil differentially expressed features. Different chemical annotation strategies were accomplished for those significant features. We found metabolites associated with either atherosclerosis progression, or colchicine treatment, or both. Atherosclerosis was profoundly associated with an increase in circulating bile acids. Most of the changes associated with sterol metabolism could not be reverted by colchicine treatment. However, the variations in lysine, tryptophan and cysteine metabolism among others, have shown new potential mechanisms of action of the drug, also related to atherosclerosis progression, but not previously described. Atherosclerosis is a chronic inflammatory disease that progressively leads to myocardial infarction and stroke 1. Recruitment of monocytes within the vascular wall is an early phenomenon in the development of atherosclerotic plaques 2. Its activation and transformation into macrophages release chemotactic molecules and proteolytic enzymes that develop and successively destabilize the plaques 3,4. Animal models of atherosclerosis have been laborious to ascertain since important hallmarks of human disease are not fully replicated in other species. Rabbits may provide valuable insights and allow the transfer of findings to understand human atherosclerosis and evaluate therapies for it because their lipid metabolism is rather like humans and unlike rodents. Native New Zealand White rabbits (NZW) fed with a cholesterol-rich diet (1%) for at least 8 weeks represent the quickest way to establish arteriosclerosis 5. It will mostly induce macrophage-rich fatty streaks, and the