Transparent exploration opens the door for scientific novelty through stimulating new or modified claims about hypotheses, models, and theories. In this second of two consecutive papers, we outline foundations, goals and means of conducting exploration. Transparency in how exploration has been done (through preregistration, open data and open analysis) is crucial for assessing the initial amount of evidence for a claim and the explorative approach to succeed. We discuss how background knowledge may inform exploration planning between the conflicting goals of completeness and efficiency. Efficiency means that new and modify claims should withstand severe testing with new data and generates relevant new knowledge. We provide guidance on filtering local data patterns (e.g. internal cross-validation) and smoothing global data patterns. The paper ends with recommendations derived from the arguments of both papers: an exploratory research agenda and suggestions for stakeholders such as journal editors on how to implement more valuable exploration. These include special journal sections or entire journals dedicated to explorative research and a mandatory separate listing of confirmed and new claims yet in a paper’s abstract.