We have identified the protein MIR16 (for Membrane Interacting protein of RGS16) from a yeast two-hybrid screen by using RGS16 as bait. MIR16 shares strong homology with bacterial glycerophosphodiester phosphodiesterases. It interacts with RGS16 and, more weakly, with several other selected RGS proteins. Analysis of deletion mutants showed that the N-terminal region of the RGS domain in RGS16 is required for its interaction with MIR16. MIR16 is an integral membrane glycoprotein, because it remained associated with membrane fractions after alkaline treatment and because, in some cells, it is sensitive to digestion with endoglycosidase H. By immunofluorescence and immunoelectron microscopy, MIR16 was localized on the plasma membrane in liver and kidney and on intracellular membranes in rat pituitary and cultured pituitary cells. MIR16 represents the only integral membrane protein identified thus far to interact with an RGS domain and, to our knowledge, is the only mammalian glycerophosphodiester phosphodiesterase that has been cloned. The putative enzymatic activity of MIR16 and its interaction with RGS16 suggest that it may play important roles in lipid metabolism and in G protein signaling.G protein ͉ integral membrane protein ͉ lipid metabolism H eterotrimeric G proteins transduce a variety of extracellular signals from G protein-coupled receptors to downstream G protein effectors (1, 2). Recently, a protein family, the RGS proteins (for Regulator of G protein Signaling), has been discovered; these proteins regulate G␣ subunits by acting as GTPase activating proteins (3-5). To date, at least 24 distinct RGS proteins have been found in mammals, but information on the connections of RGS proteins to specific signaling pathways and on the functional roles of RGS proteins in specific biological systems is still limited (3, 4).We have been interested in defining the G protein-mediated signaling pathways associated with intracellular membranes (6, 7). Previously, we identified GAIP (G␣ interacting protein), one of the founding members of the RGS protein family, and localized it to clathrin-coated vesicles in pituitary cells and hepatocytes, among others (6). Besides GAIP, additional RGS proteins have also been found in pituitary, liver, and other secretory cells (3). We have chosen RGS16 (ref. 8; ref. 9; ref. 10) for further study, because our interests focus on secretory cells and because RGS16 was shown to be highly expressed in mouse pituitary and liver (8). RGS16 has been shown to be a GTPase activating protein for members of the G␣i family in vitro (9, 11). However, little information is available concerning the interaction of RGS16 with molecules other than G␣ subunits.To define further signaling pathways involving RGS16, we used the yeast two-hybrid system to identify proteins that interact with RGS16. Herein, we report the discovery of an integral membrane protein MIR16 (for Membrane Interacting protein of RGS16), identified by screening a pituitary cell cDNA library with RGS16 as bait. Sequence analysis ind...