The type IV pili (T4P) system is a supermolecular machine observed in prokaryotes. Cells repeat the cycle of T4P extension, surface attachment, and retraction to drive twitching motility. Although the properties of T4P as a motor have been scrutinized with biophysics techniques, the mechanism of regulation remains unclear. Here we provided the framework of the T4P dynamics at the single-cell level in Synechocystis sp. PCC6803, which can recognize light direction. We demonstrated that the dynamics was detected by fluorescent beads under an optical microscope and controlled by blue light that induces negative phototaxis; extension and retraction of T4P was activated at the forward side of lateral illumination to move away from the light source. Additionally, we directly visualized each pilus by fluorescent labeling, allowing us to quantify their asymmetric distribution. Finally, quantitative analyses of cell tracking indicated that T4P was generated uniformly within 0.2 min after blue-light exposure, and within the next 1 min the activation became asymmetric along the light axis to achieve directional cell motility; this process was mediated by the photo-sensing protein, PixD. This sequential process provides clues toward a general regulation mechanism of T4P system, which might be essentially common between archaella and other secretion apparatuses.Synechocystis sp. PCC6803 | twitching motility | phototaxis | signal transduction | fluorescence T ype IV pili (T4P) are fascinating supermolecular machines that drive twitching motility, protein secretion, and DNA uptake in prokaryotes (1). Twitching motility is now widely accepted as a form of bacterial translocation involving repetition of the cycle of extension and retraction of the pili (2, 3) (Fig. 1A), which is powered by assembly and disassembly ATPase at the base of helical pilus fibers (4). The mechanical response of a single pilus has been scrutinized in great detail using biophysical approaches such as optical tweezers methodology in Neisseria gonorrheae (3, 5-7), although the dynamic properties resulting from the response to various environmental signals remain less understood than those of bacterial flagella. T4P is also evolutionarily and structurally related to flagella in archaea, which have recently been designated archaella (8-11). Although newly developed techniques enable us to examine the dynamic properties of the machinery, little is known about the regulation mechanism of T4P because tens of components cooperate to orchestrate the dynamics of both the archaella and T4P system. Such complexity hampers the design of an experimental setup with quantitative and reproducible evaluations.To address how the T4P system is activated or repressed by environmental signals over a short timescale, we here used Synechocystis sp. PCC6803, a model cyanobacteria (12)(13)(14). This species exhibits T4P-dependent twitching motility on surfaces such as soft-agar plates at speeds of a few micrometers per minute, and the cell motility direction is regulated both posi...