“…Our cultural analyses and culture-independent molecular approaches additionally assessing fastidious and non-cultivable bacteria revealed, however, that the host-specific differences in numbers of the most common intestinal bacterial groups, genera, and species between respective fecal donor suspensions could also be observed in the intestinal tract of IL-10 −/− mice after establishment of the complex human versus murine intestinal microbiota following peroral FMT. Even though the methods applied here have their limitations regarding the possibilities to provide a complete picture of the commensal ecological conditions within the gut lumen, the combinatory approach of quantitative “culturomics” plus 16S rRNA-based analyses have been proven highly reliable for a comprehensive survey of differences in host-specific intestinal microbiota compositions [ 15 , 16 , 24 , 26 , 27 , 28 , 29 , 30 , 31 , 32 , 33 , 34 ]. One needs to take into account, however, that during processing of the fecal donor samples, including freezing and thawing, individual bacterial strains might have been reduced and not fully established within the intestinal tract upon FMT [ 27 , 30 , 35 ].…”