Escherichia coli recF mutants are hypermutable when treated with methyl methanesulfonate (G. C. Walker, Mol. Gen. Genet. 152:93-103, 1977). In this study, methylation hypermutability of recF mutant strains was examined, and it was found that recF+ is required for normal induction of the adaptive response to alkylation damage. Although this regulatory effect of recF mutations results in reduced levels of enzymes that specifically repair methyl lesions in DNA, it only partially explains the hypermutability. Further examination showed that methylation hypermutability of recF mutant strains required a functional umuDC operon, a component of the SOS response. These results lead to the hypothesis that methylation hypermutability results from the effects of recF mutations on the induction of both the SOS response and the adaptive response.The adaptive response of Escherichia coli to alkylation damage involves four known genes arranged in three transcriptional units, the ada-alkB operon and the alkA and aidB genes (for a review, see references 18 and 32). This response is induced when cells are treated with alkylating agents (primarily methylating agents) and the induced activities specifically repair alkylation lesions in DNA. This repair is accomplished by enzymes that either remove methyl groups from modified sites or remove methylated bases from DNA. Induction requires a wild-type ada gene (14) and occurs when Ada protein transfers methyl groups from methylphosphotriesters in the DNA backbone to itself. Methylated Ada protein then binds to a sequence adjacent to the promoter and stimulates transcription of the ada-alkB operon, the alkA gene, and presumably also the aidB gene (22,28). The results presented here show that a wild-type recF gene is required for normal induction of adaptive response genes.Mutations in the recF gene are pleiotropic, affecting recombination, DNA repair, expression of the SOS response, and mutagenesis. The effects of recF mutations on chromosomal recombination are seen in recB recC sbc mutants (12); in this genetic background, recombination requires the wild-type recF gene. recF mutations also have effects on DNA metabolism in wild-type cells; recF is required for recombination between plasmids (8, 13) and for mutagenesis and repair of UV damage to DNA (1,4,6,7,11,12,15,23,24,40). Many of the DNA repair defects associated with recF mutations can be ascribed to their effect on induction of the SOS response, a damage-inducible DNA repair response (5,6,21,(33)(34)(35). The SOS response is induced when RecA protein is activated by DNA damage.Activated RecA then stimulates cleavage of LexA protein, thereby derepressing the SOS genes, which are under the control of the LexA repressor protein (19,20,39,41). Mutations in recF decrease the induction of the SOS response and result in increased sensitivity to DNA-damaging agents (6,21,29,34,35). The role of recF in this regulation is, however, not clear at present. Walker (38) noted that the recF143 mutation also affected mutagenesis by methyl methan...