One sentence summary: A systematic structure-guided mutagenesis study of chemokine receptor CXCR4 reveals novel insights into epitopes regulating ligand recognition, ligand specificity and CXCL12-mediated signaling.Abstract: Due to their prominent role in development and infamy in cancer and HIV, the chemokine receptor CXCR4 and its ligand, CXCL12, have been the subject of numerous structural and functional studies. Nevertheless, a high resolution structure of the CXCR4-CXCL12 complex has not been reported. Even with several alternative computational models of the complex at hand, the relative contributions of different interaction epitopes to ligand binding, ligand selectivity and signaling are not readily apparent. Here, building upon our latest structural model, we employed a systematic mutagenesis strategy to dissect the functional anatomy of the of CXCR4-CXCL12 complex. Key charge swap mutagenesis experiments supported pairwise interactions between oppositely charged residues in the receptor and chemokine, confirming the accuracy of the predicted orientation of the chemokine relative to the receptor, while also providing insight into ligand selectivity. Progressive deletion of N-terminal residues revealed an unexpected contribution of the receptor N-terminus to chemokine signaling; this finding challenges a longstanding "two-site" hypothesis about the essential features of the receptor-chemokine interaction where the N-terminus is purported to only contribute to binding affinity. The results suggest that while the interaction of the chemokine N-terminus with the receptor binding pocket is the key driver of signaling, the signaling amplitude depends on the extent to which the receptor N-terminus binds the chemokine. Along with systematic characterization of other epitopes, the current data allow us to propose a comprehensive experimentally-consistent structural model for how the chemokine binds CXCR4 and initiates signal transmission through the receptor TM domain.
IntroductionChemokine receptors are members of the Class A family G protein-coupled receptors (GPCRs) that are best known for their role in controlling the migration of cells, particularly leukocytes in the context of immune system function. They are activated by chemokines, small 8-10 kDa secreted proteins, via a mechanism that has long been described as involving "two sites" or "two steps" (1-5). According to the two-site mechanism, the globular domain of the chemokine binds to the N-terminus of a receptor (referred to as chemokine recognition site 1, CRS1) and contributes primarily to the stability of the complex whereas the N-terminus of the chemokine binds in the transmembrane (TM) domain binding pocket of the receptor (chemokine recognition site 2, CRS2) to activate signaling (6). The distinction between these two sites arose from the general observation that mutations in chemokine N-termini produce a disproportionately large effect on receptor signaling efficacy compared to mutations in the chemokine globular domains (7,8), with correspondin...