The KstR-dependent promoter of the MSMEG_5228 gene of Mycobacterium smegmatis, which encodes the 3-b-hydroxysteroid dehydrogenase (3-b HSD MS ) responsible for the first step in the cholesterol degradative pathway, has been characterized. Primer extension analysis of the P 5228 promoter showed that the transcription starts at the ATG codon, thus generating a leaderless mRNA lacking a 59 untranslated region (59UTR). Footprint analyses demonstrated experimentally that KstR specifically binds to an operator region of 31 nt containing the quasi-palindromic sequence AACTGGAACGTGTTTCAGTT, located between the "5 and "35 positions with respect to the transcription start site. This region overlaps with the "10 and "35 boxes of the P 5228 promoter, suggesting that KstR represses MSMEG_5228 transcription by preventing the binding of RNA polymerase. Using a P 5228 -b-galactosidase fusion we have demonstrated that KstR is able to work as a repressor in a heterologous system like Escherichia coli. A 3D model of the KstR protein revealed folding typical of TetR-type regulators, with two domains, i.e. a DNA-binding N-terminal domain and a regulator-binding C-terminal domain composed of six helices with a long tunnel-shaped hydrophobic pocket that might interact with a putative highly hydrophobic inducer. The finding that similar P 5228 promoter regions have been found in all mycobacterial strains examined, with the sole exception of Mycobacterium tuberculosis, provides new clues about the role of cholesterol in the pathogenicity of this micro-organism.
INTRODUCTIONMycobacterium smegmatis belongs to the fast-growing nonpathogenic mycobacteria and has been widely used as a model organism to study the biology of other virulent and extremely slow-growing species like Mycobacterium tuberculosis; therefore much interest has been focused on this system for its potential use in genetic studies. Interestingly, it has been described that only fast-growing non-pathogenic mycobacteria were able to grow on cholesterol as a sole carbon source (Av-Gay & Sobouti, 2000); however, more recent results have demonstrated that cholesterol is also used as a carbon source during infection of M. tuberculosis (Pandey & Sassetti, 2008). Although recent biochemical and structural studies have assigned a role for some of the mycobacterial genes in cholesterol catabolism, the complete degradative pathway and its specific regulation remain to be fully established (Capyk et al., 2009;Knol et al., 2008;Lack et al., 2010;Yam et al., 2009). Recently, it has been shown that cholesterol utilization in mycobacteria is controlled by two TetR-type transcriptional repressors (Kendall et al., 2007(Kendall et al., , 2010. One of these repressors, named KstR, is encoded by the Rv3574 gene in M. tuberculosis and by the MSMEG_6042 gene in M. smegmatis. KstR controls the expression of 83 cholesterol catabolic genes (kstR regulon) (Kendall et al., 2007); many of these genes are essential for virulence, highlighting the importance of cholesterol catabolism in the pathogenici...