19Nontuberculous mycobacteria (NTM) are emerging opportunistic pathogens that 20 form biofilms in environmental reservoirs such as household water systems and 21 aggregate into phagocytosis-resistant clusters during infection. NTM constitutively 22 aggregate in vitro, a phenotype typically considered to be a by-product of the mycolic-23 acid-rich cell wall. While culturing a model NTM, Mycobacterium smegmatis, in rich 24 medium, we fortuitously discovered that planktonic cells accumulated in the culture after 25 ~3 days. By providing selective pressure for bacteria that disperse earlier, we isolated a 26 strain with two mutations in the oligopeptide permease operon (opp). A mutant lacking 27 the opp operon (Δopp) dispersed earlier and more completely than wildtype (WT). We
28show that Δopp's aggregation defect was nutrient related; aggregation was restored by 29 non-peptide carbon sources. Experiments with WT M. smegmatis revealed that growth 30 as aggregates is favored when carbon is replete, while dispersal can be induced by 31 carbon starvation. In addition, under conditions of low available carbon relative to 32 available nitrogen, M. smegmatis grows as planktonic cells. By adjusting carbon and 33 nitrogen sources in defined medium, we tuned the cellular C:N ratio such that M. 34 smegmatis grows either as aggregates or planktonic cells. Lastly, we tested the effect of 35 C:N balance on aggregation in clinically relevant NTM. Altogether, we show that NTM 36 aggregation is a controlled process that is regulated by the relative availability of carbon 37 and nitrogen for metabolism. Because NTM aggregation is correlated with increased 38 virulence, these results may contribute to targeted anti-biofilm therapeutics. 39 40 Importance: 41 Free-living bacteria can assemble into multicellular aggregates called biofilms. 42 Biofilms help bacteria tolerate multiple stresses, including antibiotics and the host 43 immune system. Differing environmental pressures have resulted in biofilm architecture 44 and regulation varying among bacterial species and strains. Nontuberculous 45 mycobacteria are a group of emerging opportunistic pathogens that utilize biofilms to 46 adhere to household plumbing and showerheads and to avoid phagocytosis by host 47 immune cells. Mycobacteria harbor a unique cell wall built chiefly of long chain mycolic 48 acids that confers hydrophobicity and has been thought to cause constitutive 49 aggregation in liquid media. Here we show that aggregation is instead a regulated 50 process dictated by the balance of available carbon and nitrogen. Understanding that 51 mycobacteria utilize metabolic cues to regulate the transition between planktonic and 52 aggregated cells reveals an inroad to controlling aggregation through targeted 53 therapeutics. 54 55 56 57 58 59 60 61 4Introduction: 62 The adhesive biofilm matrix can serve as a physical barrier against external 63 stresses such as desiccation and predation, can interact with and sequester 64 antimicrobial agents, and can short-circuit phagocyte...