NatB N␣-terminal acetyltransferase of Saccharomyces cerevisiae acts cotranslationally on proteins with MetGlu-or Met-Asp-termini and subclasses of proteins with Met-Asn-and Met-Met-termini. NatB is composed of the interacting Nat3p and Mdm20p subunits, both of which are required for acetyltransferase activity. The phenotypes of nat3-⌬ and mdm20-⌬ mutants are identical or nearly the same and include the following: diminished growth at elevated temperatures and on hyperosmotic and nonfermentable media; diminished mating; defective actin cables formation; abnormal mitochondrial and vacuolar inheritance; inhibition of growth by DNAdamaging agents such as methyl methanesulfonate, bleomycin, camptothecin, and hydroxyurea; and inhibition of growth by the antimitotic drugs benomyl and thiabendazole. The similarity of these phenotypes to the phenotypes of certain act1 and tpm1 mutants suggests that such multiple defects are caused by the lack of acetylation of actin and tropomyosins. However, the lack of acetylation of other unidentified proteins conceivably could cause the same phenotypes. Furthermore, unacetylated actin and certain N-terminally altered actins have comparable defective properties in vitro, particularly actin-activated ATPase activity and sliding velocity.The two cotranslational processes, cleavage of N-terminal methionine residues and N-terminal acetylation, are by far the most common modifications, occurring on the vast majority of proteins. Eukaryotic cytosolic proteins initiate with methionine that is cleaved from nascent chains of most proteins. Subsequently, N-terminal acetylation occurs on certain of the proteins, either containing or lacking the methionine residue. This N-terminal acetylation occurs on over one-half of soluble eukaryotic proteins but seldom on prokaryotic proteins (1-3).N-terminal acetylation of proteins is catalyzed by N-terminal acetyltransferases (NATs) 1 that transfer acetyl groups from acetyl-CoA to termini of ␣-amino groups. We have established that Saccharomyces cerevisiae contains three major NATs, NatA, NatB, and NatC, with catalytic subunits Ard1p, Nat3p, and Mak3p, respectively, and that each is required for acetylating different groups of proteins (4, 5). As summarized previously (4, 5), subclasses of proteins with Ser-, Ala-, Gly-, or Thr-termini are acetylated by NatA; proteins with Met-Glu-or Met-Asp-termini and subclasses of proteins with Met-Asn-and Met-Met-termini are acetylated by NatB; and subclasses of proteins with Met-Ile, Met-Leu-, Met-Trp-, or Met-Phe-termini are acetylated by NatC. In addition, a special subclass of NatA substrates with Ser-Glu-, Ser-Asp-, Ala-Glu-, or Gly-Glu-termini, designated NatAЈ, are only partially acetylated in nat3-⌬ or mak3-⌬ mutants (6).In regard to the present study, special emphasis should be made of the NatB substrates, some of which were previously identified by using two-dimensional gel electrophoresis of proteins from normal and nat3-⌬ strains, including the following: actin (Act1p); the small subunit of ribonucleotide...